miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 47271 0.7 0.802863
Target:  5'- uUCGACugguaauuGCCGUCGAcCGAGAauuCGCCCg -3'
miRNA:   3'- -AGUUG--------UGGUAGUUaGUUCUgc-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 40235 0.67 0.912184
Target:  5'- aCAGCGCCGaaaUCGuUCcguuGAUGuCGCCCa -3'
miRNA:   3'- aGUUGUGGU---AGUuAGuu--CUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 35994 0.72 0.718132
Target:  5'- cCGACguuGCCGgacguGUCGaccAGGCGCGCCCa -3'
miRNA:   3'- aGUUG---UGGUagu--UAGU---UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44103 0.67 0.912184
Target:  5'- gCGAgGCCcgCcguGUCGAu-CGCGCCCg -3'
miRNA:   3'- aGUUgUGGuaGu--UAGUUcuGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 10619 1.13 0.002228
Target:  5'- uUCAACACCAUCAAUCAAGACGCGCCCc -3'
miRNA:   3'- -AGUUGUGGUAGUUAGUUCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 43049 0.68 0.905397
Target:  5'- cCAGCguGCCGUCcuuUC---GCGCGCCCu -3'
miRNA:   3'- aGUUG--UGGUAGuu-AGuucUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 51794 0.69 0.870473
Target:  5'- cCAGCACCAUCGuuuucccggccugCAuGGCGcCGCCa -3'
miRNA:   3'- aGUUGUGGUAGUua-----------GUuCUGC-GCGGg -5'
24885 3' -49.6 NC_005284.1 + 49635 0.73 0.616062
Target:  5'- aUCGACGCCcaGUCGAucggauUCAGGACGauCCCg -3'
miRNA:   3'- -AGUUGUGG--UAGUU------AGUUCUGCgcGGG- -5'
24885 3' -49.6 NC_005284.1 + 47796 0.73 0.627493
Target:  5'- -gAGCGCCAU--GUCGAG-CGCGCCa -3'
miRNA:   3'- agUUGUGGUAguUAGUUCuGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 41540 0.73 0.650357
Target:  5'- uUCAGCACguUCAGUUGAGACagguCGCCg -3'
miRNA:   3'- -AGUUGUGguAGUUAGUUCUGc---GCGGg -5'
24885 3' -49.6 NC_005284.1 + 36864 0.73 0.660628
Target:  5'- gUCGGCGCCuuGUCGAgcgugauccuuUCGccagccgcugcgcGGAUGCGCCCg -3'
miRNA:   3'- -AGUUGUGG--UAGUU-----------AGU-------------UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 38614 0.8 0.280777
Target:  5'- cCAGCGCCAUCGAcgcgccgagccccaUCAGcGAUGUGCCCc -3'
miRNA:   3'- aGUUGUGGUAGUU--------------AGUU-CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 34100 0.71 0.750948
Target:  5'- cCAACACCAUgAAUCGAua-GUGCCa -3'
miRNA:   3'- aGUUGUGGUAgUUAGUUcugCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 34414 0.71 0.761643
Target:  5'- gUCAACGCaucugCAAUCAAuuGACuGCGCUCg -3'
miRNA:   3'- -AGUUGUGgua--GUUAGUU--CUG-CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 5895 0.7 0.792817
Target:  5'- gCGACACCuUCGccgCcGGGCGUGUCCa -3'
miRNA:   3'- aGUUGUGGuAGUua-GuUCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 41903 0.7 0.792817
Target:  5'- aCuGCGCCGUC-AUCuguAGACGgCGCCg -3'
miRNA:   3'- aGuUGUGGUAGuUAGu--UCUGC-GCGGg -5'
24885 3' -49.6 NC_005284.1 + 10922 0.7 0.812716
Target:  5'- aCGACGCgCGgaUC-AUCAAcGGCGCGCUCa -3'
miRNA:   3'- aGUUGUG-GU--AGuUAGUU-CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 42341 0.69 0.831797
Target:  5'- uUCGACgauccGCCcUCGAUCGAaacuGGCGCGCUg -3'
miRNA:   3'- -AGUUG-----UGGuAGUUAGUU----CUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 11904 0.8 0.290486
Target:  5'- cUCGGCAUCGUCcAUCGAGAgGCccGCCCa -3'
miRNA:   3'- -AGUUGUGGUAGuUAGUUCUgCG--CGGG- -5'
24885 3' -49.6 NC_005284.1 + 17406 0.66 0.955813
Target:  5'- gCAACugCGUgcuUC-AGACGCGCgCg -3'
miRNA:   3'- aGUUGugGUAguuAGuUCUGCGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.