Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24885 | 3' | -49.6 | NC_005284.1 | + | 9804 | 0.68 | 0.898316 |
Target: 5'- cCAACgucGCCggCAGUCAGGaaaucgGCGCGCgCa -3' miRNA: 3'- aGUUG---UGGuaGUUAGUUC------UGCGCGgG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 11038 | 0.7 | 0.792817 |
Target: 5'- cCAACAUCGaCAAUCu-GACGCGCg- -3' miRNA: 3'- aGUUGUGGUaGUUAGuuCUGCGCGgg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 49143 | 0.71 | 0.761643 |
Target: 5'- -aGGCGCgCGUC-GUCAaggcGGACGgGCCCg -3' miRNA: 3'- agUUGUG-GUAGuUAGU----UCUGCgCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 26348 | 0.71 | 0.761643 |
Target: 5'- gCGGCACgGUCAAcgccGGCGCGCCg -3' miRNA: 3'- aGUUGUGgUAGUUaguuCUGCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 37075 | 0.72 | 0.703634 |
Target: 5'- cUCGAcCGCCAUCGAcgcgccggcgagauUCAGGGCGuCGCgCa -3' miRNA: 3'- -AGUU-GUGGUAGUU--------------AGUUCUGC-GCGgG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 4925 | 0.68 | 0.905397 |
Target: 5'- cCGGCACUG-CAAUCGuauaucgacGGcCGUGCCCg -3' miRNA: 3'- aGUUGUGGUaGUUAGU---------UCuGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 17016 | 0.67 | 0.912184 |
Target: 5'- cCGACGCgAUCAacGUCGAGGCGauuaCCg -3' miRNA: 3'- aGUUGUGgUAGU--UAGUUCUGCgcg-GG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 47282 | 0.67 | 0.918041 |
Target: 5'- aUCGACgGCCGUCGccgcgugAUCAAcGCGCGCg- -3' miRNA: 3'- -AGUUG-UGGUAGU-------UAGUUcUGCGCGgg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 17406 | 0.66 | 0.955813 |
Target: 5'- gCAACugCGUgcuUC-AGACGCGCgCg -3' miRNA: 3'- aGUUGugGUAguuAGuUCUGCGCGgG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 21806 | 0.66 | 0.951386 |
Target: 5'- aCGGCAgCCGgugg-CGAcGGCGUGCCCg -3' miRNA: 3'- aGUUGU-GGUaguuaGUU-CUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 48881 | 0.66 | 0.951386 |
Target: 5'- gUCGGCGCCGU------GGACaCGCCCg -3' miRNA: 3'- -AGUUGUGGUAguuaguUCUGcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 3677 | 0.66 | 0.948592 |
Target: 5'- -uGGCGCCGggggcauuuucaaaCAGUCucGAUGCGCUCa -3' miRNA: 3'- agUUGUGGUa-------------GUUAGuuCUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 33782 | 0.66 | 0.941666 |
Target: 5'- cCGGCGCCGacuUCGuaGUCGAu-CGCGCCg -3' miRNA: 3'- aGUUGUGGU---AGU--UAGUUcuGCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 22350 | 0.66 | 0.941666 |
Target: 5'- uUCAGCACCAUC--UCgAAGAguucgUGCGUCa -3' miRNA: 3'- -AGUUGUGGUAGuuAG-UUCU-----GCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 5077 | 0.67 | 0.936365 |
Target: 5'- gCGACGCCgAUCGA-CAAGAUcCGUCUg -3' miRNA: 3'- aGUUGUGG-UAGUUaGUUCUGcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 6964 | 0.67 | 0.934162 |
Target: 5'- cCGGCGCCGUauuucGUCGugaccgcguacauGGCGCGCUCg -3' miRNA: 3'- aGUUGUGGUAgu---UAGUu------------CUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 47753 | 0.67 | 0.931341 |
Target: 5'- gCGGCGCgCGUacguccgcguaagcaGAUCGAGGCGgCGCUCg -3' miRNA: 3'- aGUUGUG-GUAg--------------UUAGUUCUGC-GCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 32014 | 0.67 | 0.930767 |
Target: 5'- ---cCGCCGUCGu---AGACauGCGCCCa -3' miRNA: 3'- aguuGUGGUAGUuaguUCUG--CGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 35254 | 0.67 | 0.930767 |
Target: 5'- gCAGCACCcaaccuUCGccAUCGGGugGUGUCg -3' miRNA: 3'- aGUUGUGGu-----AGU--UAGUUCugCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 5716 | 0.67 | 0.918676 |
Target: 5'- gCAGCuCCGgcggCGAUgaaCAAGAagGCGCCCg -3' miRNA: 3'- aGUUGuGGUa---GUUA---GUUCUg-CGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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