Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24885 | 3' | -49.6 | NC_005284.1 | + | 9290 | 0.66 | 0.959958 |
Target: 5'- aCGACgAUCGggCAGaCGAuGACGCGCCUg -3' miRNA: 3'- aGUUG-UGGUa-GUUaGUU-CUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 12434 | 0.66 | 0.959958 |
Target: 5'- gUCAgcGCGCCAguuUCGAUCGAGG-GCGgaucgucgaacCCCg -3' miRNA: 3'- -AGU--UGUGGU---AGUUAGUUCUgCGC-----------GGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 17406 | 0.66 | 0.955813 |
Target: 5'- gCAACugCGUgcuUC-AGACGCGCgCg -3' miRNA: 3'- aGUUGugGUAguuAGuUCUGCGCGgG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 30251 | 0.66 | 0.951386 |
Target: 5'- gUCG--GCCGUCGAgc-GGGCGCGUUCg -3' miRNA: 3'- -AGUugUGGUAGUUaguUCUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 21806 | 0.66 | 0.951386 |
Target: 5'- aCGGCAgCCGgugg-CGAcGGCGUGCCCg -3' miRNA: 3'- aGUUGU-GGUaguuaGUU-CUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 48881 | 0.66 | 0.951386 |
Target: 5'- gUCGGCGCCGU------GGACaCGCCCg -3' miRNA: 3'- -AGUUGUGGUAguuaguUCUGcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 3677 | 0.66 | 0.948592 |
Target: 5'- -uGGCGCCGggggcauuuucaaaCAGUCucGAUGCGCUCa -3' miRNA: 3'- agUUGUGGUa-------------GUUAGuuCUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 33782 | 0.66 | 0.941666 |
Target: 5'- cCGGCGCCGacuUCGuaGUCGAu-CGCGCCg -3' miRNA: 3'- aGUUGUGGU---AGU--UAGUUcuGCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 22350 | 0.66 | 0.941666 |
Target: 5'- uUCAGCACCAUC--UCgAAGAguucgUGCGUCa -3' miRNA: 3'- -AGUUGUGGUAGuuAG-UUCU-----GCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 5077 | 0.67 | 0.936365 |
Target: 5'- gCGACGCCgAUCGA-CAAGAUcCGUCUg -3' miRNA: 3'- aGUUGUGG-UAGUUaGUUCUGcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 6964 | 0.67 | 0.934162 |
Target: 5'- cCGGCGCCGUauuucGUCGugaccgcguacauGGCGCGCUCg -3' miRNA: 3'- aGUUGUGGUAgu---UAGUu------------CUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 47753 | 0.67 | 0.931341 |
Target: 5'- gCGGCGCgCGUacguccgcguaagcaGAUCGAGGCGgCGCUCg -3' miRNA: 3'- aGUUGUG-GUAg--------------UUAGUUCUGC-GCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 32014 | 0.67 | 0.930767 |
Target: 5'- ---cCGCCGUCGu---AGACauGCGCCCa -3' miRNA: 3'- aguuGUGGUAGUuaguUCUG--CGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 35254 | 0.67 | 0.930767 |
Target: 5'- gCAGCACCcaaccuUCGccAUCGGGugGUGUCg -3' miRNA: 3'- aGUUGUGGu-----AGU--UAGUUCugCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 10497 | 0.66 | 0.961538 |
Target: 5'- --uGCGCCGUCGGUgGucucggaugccgaucAGGCaGCGCUCg -3' miRNA: 3'- aguUGUGGUAGUUAgU---------------UCUG-CGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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