miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 5' -55 NC_005284.1 + 24829 0.66 0.748583
Target:  5'- cGGGACgcUGUCUCGccCGUCaagacacgggcaaacGCAGCa -3'
miRNA:   3'- aCCCUGa-ACGGAGCuaGCAG---------------UGUCGc -5'
24885 5' -55 NC_005284.1 + 42970 0.66 0.712592
Target:  5'- aGGGAgUUUGCCgCGGgggCGUUGCAGUc -3'
miRNA:   3'- aCCCU-GAACGGaGCUa--GCAGUGUCGc -5'
24885 5' -55 NC_005284.1 + 45642 0.67 0.669105
Target:  5'- cGGGGCagGCUggCGGcUCGUCGguGCGc -3'
miRNA:   3'- aCCCUGaaCGGa-GCU-AGCAGUguCGC- -5'
24885 5' -55 NC_005284.1 + 16171 0.67 0.669105
Target:  5'- aUGGGGCUcggcGCgUCGAUgGcgCugGGCGg -3'
miRNA:   3'- -ACCCUGAa---CGgAGCUAgCa-GugUCGC- -5'
24885 5' -55 NC_005284.1 + 24245 0.68 0.614034
Target:  5'- gUGGGAUUUaCC-CGAUCGUCAgcguaaAGCGc -3'
miRNA:   3'- -ACCCUGAAcGGaGCUAGCAGUg-----UCGC- -5'
24885 5' -55 NC_005284.1 + 36924 0.68 0.603028
Target:  5'- cGGGGCcgGCCUUcuuugGGUCGgcaACGGCGa -3'
miRNA:   3'- aCCCUGaaCGGAG-----CUAGCag-UGUCGC- -5'
24885 5' -55 NC_005284.1 + 10957 0.69 0.527163
Target:  5'- -uGGACaaGCUUCGAUCGgCGCAGgCGg -3'
miRNA:   3'- acCCUGaaCGGAGCUAGCaGUGUC-GC- -5'
24885 5' -55 NC_005284.1 + 11410 0.69 0.526101
Target:  5'- cGGGACUugacgcgcUGCgUCGAUCGcgaaaaccgccugUCGgGGCGg -3'
miRNA:   3'- aCCCUGA--------ACGgAGCUAGC-------------AGUgUCGC- -5'
24885 5' -55 NC_005284.1 + 38238 0.7 0.475203
Target:  5'- aGGGAUUUGCUcgaUCGAUUGUCcuggugccgcCAGCGc -3'
miRNA:   3'- aCCCUGAACGG---AGCUAGCAGu---------GUCGC- -5'
24885 5' -55 NC_005284.1 + 23160 0.71 0.43554
Target:  5'- aGGGGCa---C-CGAUCGUCGCGGCGc -3'
miRNA:   3'- aCCCUGaacgGaGCUAGCAGUGUCGC- -5'
24885 5' -55 NC_005284.1 + 42520 0.74 0.290745
Target:  5'- cGGGAgCgUUGCUcguugCGAUCGUCGCGGCu -3'
miRNA:   3'- aCCCU-G-AACGGa----GCUAGCAGUGUCGc -5'
24885 5' -55 NC_005284.1 + 10653 1.08 0.001189
Target:  5'- aUGGGACUUGCCUCGAUCGUCACAGCGc -3'
miRNA:   3'- -ACCCUGAACGGAGCUAGCAGUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.