Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24885 | 5' | -55 | NC_005284.1 | + | 10653 | 1.08 | 0.001189 |
Target: 5'- aUGGGACUUGCCUCGAUCGUCACAGCGc -3' miRNA: 3'- -ACCCUGAACGGAGCUAGCAGUGUCGC- -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 42520 | 0.74 | 0.290745 |
Target: 5'- cGGGAgCgUUGCUcguugCGAUCGUCGCGGCu -3' miRNA: 3'- aCCCU-G-AACGGa----GCUAGCAGUGUCGc -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 23160 | 0.71 | 0.43554 |
Target: 5'- aGGGGCa---C-CGAUCGUCGCGGCGc -3' miRNA: 3'- aCCCUGaacgGaGCUAGCAGUGUCGC- -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 38238 | 0.7 | 0.475203 |
Target: 5'- aGGGAUUUGCUcgaUCGAUUGUCcuggugccgcCAGCGc -3' miRNA: 3'- aCCCUGAACGG---AGCUAGCAGu---------GUCGC- -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 11410 | 0.69 | 0.526101 |
Target: 5'- cGGGACUugacgcgcUGCgUCGAUCGcgaaaaccgccugUCGgGGCGg -3' miRNA: 3'- aCCCUGA--------ACGgAGCUAGC-------------AGUgUCGC- -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 10957 | 0.69 | 0.527163 |
Target: 5'- -uGGACaaGCUUCGAUCGgCGCAGgCGg -3' miRNA: 3'- acCCUGaaCGGAGCUAGCaGUGUC-GC- -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 36924 | 0.68 | 0.603028 |
Target: 5'- cGGGGCcgGCCUUcuuugGGUCGgcaACGGCGa -3' miRNA: 3'- aCCCUGaaCGGAG-----CUAGCag-UGUCGC- -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 24245 | 0.68 | 0.614034 |
Target: 5'- gUGGGAUUUaCC-CGAUCGUCAgcguaaAGCGc -3' miRNA: 3'- -ACCCUGAAcGGaGCUAGCAGUg-----UCGC- -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 16171 | 0.67 | 0.669105 |
Target: 5'- aUGGGGCUcggcGCgUCGAUgGcgCugGGCGg -3' miRNA: 3'- -ACCCUGAa---CGgAGCUAgCa-GugUCGC- -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 45642 | 0.67 | 0.669105 |
Target: 5'- cGGGGCagGCUggCGGcUCGUCGguGCGc -3' miRNA: 3'- aCCCUGaaCGGa-GCU-AGCAGUguCGC- -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 42970 | 0.66 | 0.712592 |
Target: 5'- aGGGAgUUUGCCgCGGgggCGUUGCAGUc -3' miRNA: 3'- aCCCU-GAACGGaGCUa--GCAGUGUCGc -5' |
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24885 | 5' | -55 | NC_005284.1 | + | 24829 | 0.66 | 0.748583 |
Target: 5'- cGGGACgcUGUCUCGccCGUCaagacacgggcaaacGCAGCa -3' miRNA: 3'- aCCCUGa-ACGGAGCuaGCAG---------------UGUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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