miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24886 5' -53.9 NC_005284.1 + 19463 0.66 0.808152
Target:  5'- gCGGCaGGCGCugaUCGGUgcgGGCUggaUCACGAacGCg -3'
miRNA:   3'- -GUUG-CCGCG---AGCCG---UUGA---AGUGCU--CG- -5'
24886 5' -53.9 NC_005284.1 + 21314 0.66 0.808152
Target:  5'- gCAGCaGCGC-CGGCcGACggCGCGuGUa -3'
miRNA:   3'- -GUUGcCGCGaGCCG-UUGaaGUGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 1690 0.66 0.808152
Target:  5'- uCGACGG-GCggCGGCAuuACUUCuGCGuuGCg -3'
miRNA:   3'- -GUUGCCgCGa-GCCGU--UGAAG-UGCu-CG- -5'
24886 5' -53.9 NC_005284.1 + 50330 0.66 0.808152
Target:  5'- uGGCGGCGUgccgCGGCGaaccguGCUUUcuGCGuGUg -3'
miRNA:   3'- gUUGCCGCGa---GCCGU------UGAAG--UGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 42655 0.66 0.808152
Target:  5'- uGGCGGCGCUUaGCGACauguUUCcagACGGGg -3'
miRNA:   3'- gUUGCCGCGAGcCGUUG----AAG---UGCUCg -5'
24886 5' -53.9 NC_005284.1 + 33148 0.66 0.808152
Target:  5'- -cGCGGCgaucgcacgcuGCUCGGCGuCgagCGCGGcGCg -3'
miRNA:   3'- guUGCCG-----------CGAGCCGUuGaa-GUGCU-CG- -5'
24886 5' -53.9 NC_005284.1 + 6364 0.66 0.798496
Target:  5'- -cGCGGCGaUUGGCGcguCUUCGC-AGCc -3'
miRNA:   3'- guUGCCGCgAGCCGUu--GAAGUGcUCG- -5'
24886 5' -53.9 NC_005284.1 + 31387 0.66 0.788663
Target:  5'- gAAC-GCGCcgucgCGGUuccACUUCAUGGGCu -3'
miRNA:   3'- gUUGcCGCGa----GCCGu--UGAAGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 54676 0.66 0.788663
Target:  5'- -cGCGGCGaagaCGGCg----CGCGAGCg -3'
miRNA:   3'- guUGCCGCga--GCCGuugaaGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 44717 0.66 0.788663
Target:  5'- -cGCGGuCGC-CGcGCGuuccGCUcgcUCACGAGCc -3'
miRNA:   3'- guUGCC-GCGaGC-CGU----UGA---AGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 44891 0.66 0.78568
Target:  5'- gAGCGaCGCuUCGGCGcgcugagcuccuGCUgugcggcugccgucUCGCGAGCg -3'
miRNA:   3'- gUUGCcGCG-AGCCGU------------UGA--------------AGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 9487 0.66 0.782683
Target:  5'- -cGCGGCGaCgcaggCGGCGACagCgugggucggcgcccgGCGAGCg -3'
miRNA:   3'- guUGCCGC-Ga----GCCGUUGaaG---------------UGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 48975 0.66 0.778664
Target:  5'- aAGCGGUGCUgcGCGGCUggACGGGg -3'
miRNA:   3'- gUUGCCGCGAgcCGUUGAagUGCUCg -5'
24886 5' -53.9 NC_005284.1 + 32819 0.66 0.778664
Target:  5'- gGGCGGCG-UCGGUuACggCAagGAGCa -3'
miRNA:   3'- gUUGCCGCgAGCCGuUGaaGUg-CUCG- -5'
24886 5' -53.9 NC_005284.1 + 31097 0.66 0.778664
Target:  5'- aAGCGuacGCGCgCGGguACU--GCGAGCa -3'
miRNA:   3'- gUUGC---CGCGaGCCguUGAagUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 9414 0.66 0.778664
Target:  5'- uCGACGGCaucgugaaaCUCGGCGugUcgcUCGCG-GCc -3'
miRNA:   3'- -GUUGCCGc--------GAGCCGUugA---AGUGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 35691 0.66 0.778664
Target:  5'- -cGCGGCGUUCaGCAGaUUCGagccCGAGUg -3'
miRNA:   3'- guUGCCGCGAGcCGUUgAAGU----GCUCG- -5'
24886 5' -53.9 NC_005284.1 + 8368 0.66 0.778664
Target:  5'- -uGCGGCGaugaucgCGGCGGCggcguuucagUCGCaGGGCg -3'
miRNA:   3'- guUGCCGCga-----GCCGUUGa---------AGUG-CUCG- -5'
24886 5' -53.9 NC_005284.1 + 26392 0.66 0.778664
Target:  5'- uCAACGGCaGCgUGGCugcgccGCUUCGaggUGGGCg -3'
miRNA:   3'- -GUUGCCG-CGaGCCGu-----UGAAGU---GCUCG- -5'
24886 5' -53.9 NC_005284.1 + 46663 0.66 0.778664
Target:  5'- aGACGGCGaaCGGCAaGCgaCAgguCGGGCu -3'
miRNA:   3'- gUUGCCGCgaGCCGU-UGaaGU---GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.