miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24886 5' -53.9 NC_005284.1 + 9697 1.12 0.000844
Target:  5'- uCAACGGCGCUCGGCAACUUCACGAGCg -3'
miRNA:   3'- -GUUGCCGCGAGCCGUUGAAGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 47784 0.81 0.129629
Target:  5'- aGGCGGCGCUCgcggaGGCGACgg-GCGAGCg -3'
miRNA:   3'- gUUGCCGCGAG-----CCGUUGaagUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 36852 0.76 0.249155
Target:  5'- cCGGCGGCGauugUCGGCGcCUUguCGAGCg -3'
miRNA:   3'- -GUUGCCGCg---AGCCGUuGAAguGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 10142 0.76 0.255722
Target:  5'- aGACGGCGCUCGcGCG----UACGGGCa -3'
miRNA:   3'- gUUGCCGCGAGC-CGUugaaGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 8766 0.76 0.26243
Target:  5'- gCAGCGGCGUUCGGCGuGCaUCAguugauCGAGUa -3'
miRNA:   3'- -GUUGCCGCGAGCCGU-UGaAGU------GCUCG- -5'
24886 5' -53.9 NC_005284.1 + 11588 0.76 0.26928
Target:  5'- -cGCGGaGCUCGGCGACUaCGCG-GCc -3'
miRNA:   3'- guUGCCgCGAGCCGUUGAaGUGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 10196 0.75 0.298124
Target:  5'- uGGCGGCGgUCGGCGGCUUaC-CGGGa -3'
miRNA:   3'- gUUGCCGCgAGCCGUUGAA-GuGCUCg -5'
24886 5' -53.9 NC_005284.1 + 17719 0.75 0.305699
Target:  5'- -cACGGCGUUCGGCuGCacgUCGCaGGCg -3'
miRNA:   3'- guUGCCGCGAGCCGuUGa--AGUGcUCG- -5'
24886 5' -53.9 NC_005284.1 + 23562 0.74 0.32129
Target:  5'- uGACGaaGCGCaUCGGCAACgUCGCG-GCg -3'
miRNA:   3'- gUUGC--CGCG-AGCCGUUGaAGUGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 46585 0.74 0.362829
Target:  5'- uGGCGGCGCagUgGGCAACgccgaacgUCcCGAGCg -3'
miRNA:   3'- gUUGCCGCG--AgCCGUUGa-------AGuGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 47829 0.74 0.362829
Target:  5'- gAugGGUGCUCGGCAuugACgaCGCGgaaAGCg -3'
miRNA:   3'- gUugCCGCGAGCCGU---UGaaGUGC---UCG- -5'
24886 5' -53.9 NC_005284.1 + 4641 0.73 0.371572
Target:  5'- gCAGCGGCGUgagCGGCAGCaacUCGCuGGUc -3'
miRNA:   3'- -GUUGCCGCGa--GCCGUUGa--AGUGcUCG- -5'
24886 5' -53.9 NC_005284.1 + 14962 0.73 0.380457
Target:  5'- aUAACGcGCGCcguUCGGCGGCUUCcUGuGCg -3'
miRNA:   3'- -GUUGC-CGCG---AGCCGUUGAAGuGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 47064 0.73 0.380457
Target:  5'- -uACGcCGC-CGGCGGCggCACGAGCu -3'
miRNA:   3'- guUGCcGCGaGCCGUUGaaGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 19645 0.73 0.389484
Target:  5'- aCGACGGCaa-CGGCGuGCUUCGCGuGCg -3'
miRNA:   3'- -GUUGCCGcgaGCCGU-UGAAGUGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 18913 0.72 0.426957
Target:  5'- --uCGGCGCUUGGCAcggaGCUgCGCGcGCc -3'
miRNA:   3'- guuGCCGCGAGCCGU----UGAaGUGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 51289 0.72 0.426957
Target:  5'- gAACGGCGCUUauucgGGCAAUggagCuCGAGCc -3'
miRNA:   3'- gUUGCCGCGAG-----CCGUUGaa--GuGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 40161 0.72 0.446478
Target:  5'- -cACGGCGUcgaGGUAGCg-CGCGAGCg -3'
miRNA:   3'- guUGCCGCGag-CCGUUGaaGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 9791 0.72 0.449449
Target:  5'- gCAACGGCGCgcgccaacgucgcCGGCAgucaggaaaucggcGCgcgcaUCACGGGCa -3'
miRNA:   3'- -GUUGCCGCGa------------GCCGU--------------UGa----AGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 8296 0.72 0.456423
Target:  5'- -uGCGGCG-UCGGCcaug-CACGAGCa -3'
miRNA:   3'- guUGCCGCgAGCCGuugaaGUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.