miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24886 5' -53.9 NC_005284.1 + 22386 0.66 0.777655
Target:  5'- aAugGGCGCUgacgagcCGGCAGgUguuCGAGUg -3'
miRNA:   3'- gUugCCGCGA-------GCCGUUgAaguGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 8250 0.66 0.777655
Target:  5'- -cGCuGCgGCUCGGCAagacguuggccgaGCUgUGCGAGCa -3'
miRNA:   3'- guUGcCG-CGAGCCGU-------------UGAaGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 29882 0.66 0.76851
Target:  5'- --uCGGCGC-CGGCGugUUCcaagGCGAa- -3'
miRNA:   3'- guuGCCGCGaGCCGUugAAG----UGCUcg -5'
24886 5' -53.9 NC_005284.1 + 17948 0.66 0.76851
Target:  5'- aCAAuCGcCGC-CGGCGacGCUUCACG-GCg -3'
miRNA:   3'- -GUU-GCcGCGaGCCGU--UGAAGUGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 49011 0.66 0.758213
Target:  5'- aCGAuCGGCGUUUGGuCGGCcaUUUACgGAGCc -3'
miRNA:   3'- -GUU-GCCGCGAGCC-GUUG--AAGUG-CUCG- -5'
24886 5' -53.9 NC_005284.1 + 43189 0.66 0.758213
Target:  5'- -cGCuGaCGCUCGGCcGCguagUCGcCGAGCu -3'
miRNA:   3'- guUGcC-GCGAGCCGuUGa---AGU-GCUCG- -5'
24886 5' -53.9 NC_005284.1 + 19795 0.67 0.747785
Target:  5'- gGACGGCaGCgCGGCGGCagaucucucgCGCGGGg -3'
miRNA:   3'- gUUGCCG-CGaGCCGUUGaa--------GUGCUCg -5'
24886 5' -53.9 NC_005284.1 + 8115 0.67 0.747785
Target:  5'- gCGGCGGCGUUCGGCccCgugCACaaccGCa -3'
miRNA:   3'- -GUUGCCGCGAGCCGuuGaa-GUGcu--CG- -5'
24886 5' -53.9 NC_005284.1 + 16802 0.67 0.747785
Target:  5'- -cACGuCGaaCGGCAAUaUCACGGGCu -3'
miRNA:   3'- guUGCcGCgaGCCGUUGaAGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 18215 0.67 0.747785
Target:  5'- aCGACGGCGCacagauUCaGCAACggccgaUCACGAu- -3'
miRNA:   3'- -GUUGCCGCG------AGcCGUUGa-----AGUGCUcg -5'
24886 5' -53.9 NC_005284.1 + 38914 0.67 0.746736
Target:  5'- gGGCGG-GCggguugguuaGGCGGCUUCccguucgGCGAGCa -3'
miRNA:   3'- gUUGCCgCGag--------CCGUUGAAG-------UGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 37846 0.67 0.737238
Target:  5'- cCAACcauuuuuuGCGCgCGGCAGCUcgaUCcgauGCGAGCg -3'
miRNA:   3'- -GUUGc-------CGCGaGCCGUUGA---AG----UGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 30974 0.67 0.737238
Target:  5'- gAGCGcCGUaUGGUAAUUgaUCACGAGCg -3'
miRNA:   3'- gUUGCcGCGaGCCGUUGA--AGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 18020 0.67 0.737238
Target:  5'- uCGACGGCGacaCGGUcACgcUCGcCGAGCg -3'
miRNA:   3'- -GUUGCCGCga-GCCGuUGa-AGU-GCUCG- -5'
24886 5' -53.9 NC_005284.1 + 27540 0.67 0.726582
Target:  5'- -cGCGGgGUUCGGCuAUUggcCGCGuGCg -3'
miRNA:   3'- guUGCCgCGAGCCGuUGAa--GUGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 12059 0.67 0.726582
Target:  5'- --uCGGCGCgugCGGCGAUgucucaggugUUCG-GAGCg -3'
miRNA:   3'- guuGCCGCGa--GCCGUUG----------AAGUgCUCG- -5'
24886 5' -53.9 NC_005284.1 + 16121 0.67 0.725511
Target:  5'- --uUGGCGCggUGGCGACguucgguUUCGCGcAGCc -3'
miRNA:   3'- guuGCCGCGa-GCCGUUG-------AAGUGC-UCG- -5'
24886 5' -53.9 NC_005284.1 + 21912 0.67 0.715831
Target:  5'- uCGGCGuCGC-CGGCGACgaucagCGCGAGa -3'
miRNA:   3'- -GUUGCcGCGaGCCGUUGaa----GUGCUCg -5'
24886 5' -53.9 NC_005284.1 + 21543 0.67 0.714751
Target:  5'- --uCGGCGCacaUCGGCuugccgacgagcaGGCcgCGCGGGCg -3'
miRNA:   3'- guuGCCGCG---AGCCG-------------UUGaaGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 6047 0.67 0.704995
Target:  5'- gGACGuuGuCUCGGgGGCgucCGCGAGCg -3'
miRNA:   3'- gUUGCcgC-GAGCCgUUGaa-GUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.