miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24886 5' -53.9 NC_005284.1 + 409 0.69 0.594492
Target:  5'- gCGGCGGCGCaaauggcgaguuUCGGCGcaaugCugGGGCu -3'
miRNA:   3'- -GUUGCCGCG------------AGCCGUugaa-GugCUCG- -5'
24886 5' -53.9 NC_005284.1 + 424 0.7 0.561523
Target:  5'- --cCGGUGCUUGcaCGGCUUCAuCGGGCg -3'
miRNA:   3'- guuGCCGCGAGCc-GUUGAAGU-GCUCG- -5'
24886 5' -53.9 NC_005284.1 + 891 0.7 0.572466
Target:  5'- gAACGGCaaaUCGGUGAUUgcCGCGGGCg -3'
miRNA:   3'- gUUGCCGcg-AGCCGUUGAa-GUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 1219 0.7 0.539819
Target:  5'- gCAugGGCGCgcgcCGGCAGCcgcucaugUUCaucaucacgacuGCGGGCg -3'
miRNA:   3'- -GUugCCGCGa---GCCGUUG--------AAG------------UGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 1690 0.66 0.808152
Target:  5'- uCGACGG-GCggCGGCAuuACUUCuGCGuuGCg -3'
miRNA:   3'- -GUUGCCgCGa-GCCGU--UGAAG-UGCu-CG- -5'
24886 5' -53.9 NC_005284.1 + 4046 0.69 0.583458
Target:  5'- uCAACuGGCGCUuaaCGGUGGCgauuCGAGCg -3'
miRNA:   3'- -GUUG-CCGCGA---GCCGUUGaaguGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 4641 0.73 0.371572
Target:  5'- gCAGCGGCGUgagCGGCAGCaacUCGCuGGUc -3'
miRNA:   3'- -GUUGCCGCGa--GCCGUUGa--AGUGcUCG- -5'
24886 5' -53.9 NC_005284.1 + 6047 0.67 0.704995
Target:  5'- gGACGuuGuCUCGGgGGCgucCGCGAGCg -3'
miRNA:   3'- gUUGCcgC-GAGCCgUUGaa-GUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 6364 0.66 0.798496
Target:  5'- -cGCGGCGaUUGGCGcguCUUCGC-AGCc -3'
miRNA:   3'- guUGCCGCgAGCCGUu--GAAGUGcUCG- -5'
24886 5' -53.9 NC_005284.1 + 8115 0.67 0.747785
Target:  5'- gCGGCGGCGUUCGGCccCgugCACaaccGCa -3'
miRNA:   3'- -GUUGCCGCGAGCCGuuGaa-GUGcu--CG- -5'
24886 5' -53.9 NC_005284.1 + 8250 0.66 0.777655
Target:  5'- -cGCuGCgGCUCGGCAagacguuggccgaGCUgUGCGAGCa -3'
miRNA:   3'- guUGcCG-CGAGCCGU-------------UGAaGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 8296 0.72 0.456423
Target:  5'- -uGCGGCG-UCGGCcaug-CACGAGCa -3'
miRNA:   3'- guUGCCGCgAGCCGuugaaGUGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 8333 0.71 0.486949
Target:  5'- --uCGGaCGCUCGGCGGCaUUCgGCGAcgGCg -3'
miRNA:   3'- guuGCC-GCGAGCCGUUG-AAG-UGCU--CG- -5'
24886 5' -53.9 NC_005284.1 + 8368 0.66 0.778664
Target:  5'- -uGCGGCGaugaucgCGGCGGCggcguuucagUCGCaGGGCg -3'
miRNA:   3'- guUGCCGCga-----GCCGUUGa---------AGUG-CUCG- -5'
24886 5' -53.9 NC_005284.1 + 8766 0.76 0.26243
Target:  5'- gCAGCGGCGUUCGGCGuGCaUCAguugauCGAGUa -3'
miRNA:   3'- -GUUGCCGCGAGCCGU-UGaAGU------GCUCG- -5'
24886 5' -53.9 NC_005284.1 + 9055 0.69 0.627751
Target:  5'- -uAUGGgGCUCGuGCAGCUuggacaagcguUCGCG-GCg -3'
miRNA:   3'- guUGCCgCGAGC-CGUUGA-----------AGUGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 9414 0.66 0.778664
Target:  5'- uCGACGGCaucgugaaaCUCGGCGugUcgcUCGCG-GCc -3'
miRNA:   3'- -GUUGCCGc--------GAGCCGUugA---AGUGCuCG- -5'
24886 5' -53.9 NC_005284.1 + 9487 0.66 0.782683
Target:  5'- -cGCGGCGaCgcaggCGGCGACagCgugggucggcgcccgGCGAGCg -3'
miRNA:   3'- guUGCCGC-Ga----GCCGUUGaaG---------------UGCUCG- -5'
24886 5' -53.9 NC_005284.1 + 9561 0.7 0.572466
Target:  5'- aGGCGGCGCa-GGCAGCgcUCGCcaaAGCg -3'
miRNA:   3'- gUUGCCGCGagCCGUUGa-AGUGc--UCG- -5'
24886 5' -53.9 NC_005284.1 + 9697 1.12 0.000844
Target:  5'- uCAACGGCGCUCGGCAACUUCACGAGCg -3'
miRNA:   3'- -GUUGCCGCGAGCCGUUGAAGUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.