miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 44123 0.66 0.939957
Target:  5'- aCGACAa--GUG-CGCUGUGAcgAUCGa -3'
miRNA:   3'- -GCUGUuagCGCuGCGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 29706 0.66 0.939957
Target:  5'- uGACGAUCGCGAggucgGCCgGCGuc-AUCa -3'
miRNA:   3'- gCUGUUAGCGCUg----CGG-CGCuuaUAGc -5'
24887 3' -51 NC_005284.1 + 18205 0.66 0.939957
Target:  5'- gCGGCGAUCGaCGACGgCGCa------- -3'
miRNA:   3'- -GCUGUUAGC-GCUGCgGCGcuuauagc -5'
24887 3' -51 NC_005284.1 + 44506 0.66 0.939957
Target:  5'- uCGAC-GUCGCGcUGCuCGCGu-UGUCGc -3'
miRNA:   3'- -GCUGuUAGCGCuGCG-GCGCuuAUAGC- -5'
24887 3' -51 NC_005284.1 + 44466 0.66 0.939442
Target:  5'- uCGAUGAUCugaucgaGCGGCGCCuGC--AUGUCGa -3'
miRNA:   3'- -GCUGUUAG-------CGCUGCGG-CGcuUAUAGC- -5'
24887 3' -51 NC_005284.1 + 13786 0.66 0.936827
Target:  5'- gCGACGAUCGCcguuccagcaaugccGgggggaggaACGUCGCGAAUGUa- -3'
miRNA:   3'- -GCUGUUAGCG---------------C---------UGCGGCGCUUAUAgc -5'
24887 3' -51 NC_005284.1 + 47580 0.66 0.934683
Target:  5'- uGGCGGUgCGUGACGCUGuUGAGg--CGg -3'
miRNA:   3'- gCUGUUA-GCGCUGCGGC-GCUUauaGC- -5'
24887 3' -51 NC_005284.1 + 20820 0.66 0.934683
Target:  5'- gCGuCGGUCGCGuCGUCGCuuacguugaccGAUAUCGg -3'
miRNA:   3'- -GCuGUUAGCGCuGCGGCGc----------UUAUAGC- -5'
24887 3' -51 NC_005284.1 + 36354 0.66 0.934683
Target:  5'- --uCGAUCGCGcCgGCCGCGAcgAUGuUCGa -3'
miRNA:   3'- gcuGUUAGCGCuG-CGGCGCU--UAU-AGC- -5'
24887 3' -51 NC_005284.1 + 38745 0.66 0.934683
Target:  5'- cCGACGAUUacCGGCGCaauGCGGAUcUCGu -3'
miRNA:   3'- -GCUGUUAGc-GCUGCGg--CGCUUAuAGC- -5'
24887 3' -51 NC_005284.1 + 12638 0.66 0.929124
Target:  5'- gCGGCGAUa-CGACGCUGCGuGUG-CGc -3'
miRNA:   3'- -GCUGUUAgcGCUGCGGCGCuUAUaGC- -5'
24887 3' -51 NC_005284.1 + 6778 0.66 0.929124
Target:  5'- aCGGuCAcgCGCGucACGcCCGCGAAUuccgcaauggcGUCGa -3'
miRNA:   3'- -GCU-GUuaGCGC--UGC-GGCGCUUA-----------UAGC- -5'
24887 3' -51 NC_005284.1 + 54639 0.66 0.929124
Target:  5'- aCGACGAgaaccugcaaGCGAucUGCCGUGAcUGUCa -3'
miRNA:   3'- -GCUGUUag--------CGCU--GCGGCGCUuAUAGc -5'
24887 3' -51 NC_005284.1 + 9015 0.66 0.929124
Target:  5'- aGGCGGUCGCGuuGUCGgGuGUcUCGg -3'
miRNA:   3'- gCUGUUAGCGCugCGGCgCuUAuAGC- -5'
24887 3' -51 NC_005284.1 + 6828 0.66 0.929124
Target:  5'- gGGCGAuUCGCaccgaguuGGCGCgCGCGAucgAUCGu -3'
miRNA:   3'- gCUGUU-AGCG--------CUGCG-GCGCUua-UAGC- -5'
24887 3' -51 NC_005284.1 + 17006 0.66 0.929124
Target:  5'- gCGACGAUCGcCGACGCgaucaaCGuCGAGg--CGa -3'
miRNA:   3'- -GCUGUUAGC-GCUGCG------GC-GCUUauaGC- -5'
24887 3' -51 NC_005284.1 + 8095 0.66 0.929124
Target:  5'- aCGACGAUgcaacCGCGGuCGCgGCGGcguUCGg -3'
miRNA:   3'- -GCUGUUA-----GCGCU-GCGgCGCUuauAGC- -5'
24887 3' -51 NC_005284.1 + 36064 0.66 0.923281
Target:  5'- aCGACGu---CGACGCCuGCGGAUAcgCGa -3'
miRNA:   3'- -GCUGUuagcGCUGCGG-CGCUUAUa-GC- -5'
24887 3' -51 NC_005284.1 + 31158 0.66 0.923281
Target:  5'- uGACGAUCGUcGCGCCGauccaGAcguUAUCc -3'
miRNA:   3'- gCUGUUAGCGcUGCGGCg----CUu--AUAGc -5'
24887 3' -51 NC_005284.1 + 32025 0.66 0.923281
Target:  5'- uGACGAUCGCG-CGCC-CcuugAUCGa -3'
miRNA:   3'- gCUGUUAGCGCuGCGGcGcuuaUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.