Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24887 | 3' | -51 | NC_005284.1 | + | 11401 | 0.68 | 0.858179 |
Target: 5'- uCGACAG-CGCGggacuugacGCGCUGCGucgAUCGc -3' miRNA: 3'- -GCUGUUaGCGC---------UGCGGCGCuuaUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 4987 | 0.68 | 0.858179 |
Target: 5'- uCGACuccugAAUCGUGAUGCCGUGcuc-UCGg -3' miRNA: 3'- -GCUG-----UUAGCGCUGCGGCGCuuauAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 36097 | 0.68 | 0.858179 |
Target: 5'- aGAacuuGGUCGCGuCGUCGCGAu--UCGg -3' miRNA: 3'- gCUg---UUAGCGCuGCGGCGCUuauAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 42033 | 0.68 | 0.848773 |
Target: 5'- uCGAUGAUCGCGGCaaccuucGCCGCGu-UAcCGa -3' miRNA: 3'- -GCUGUUAGCGCUG-------CGGCGCuuAUaGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 47947 | 0.68 | 0.840866 |
Target: 5'- aCGAuCGAUCGCGcGCGCCaacucgguGCGAAUcgCc -3' miRNA: 3'- -GCU-GUUAGCGC-UGCGG--------CGCUUAuaGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 32980 | 0.68 | 0.858179 |
Target: 5'- gGGCAcgccGUCGCcaccGGCuGCCGUGcAGUGUCGg -3' miRNA: 3'- gCUGU----UAGCG----CUG-CGGCGC-UUAUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 22866 | 0.68 | 0.874517 |
Target: 5'- gCGGCGGgaagggCGuCGAgCGCCGCGAGcugAUCa -3' miRNA: 3'- -GCUGUUa-----GC-GCU-GCGGCGCUUa--UAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 46842 | 0.68 | 0.858179 |
Target: 5'- uCGAUGAUCGaug-GCCGCGAAuUAUCGc -3' miRNA: 3'- -GCUGUUAGCgcugCGGCGCUU-AUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 21613 | 0.68 | 0.840866 |
Target: 5'- gGGCAAgaucUCGCG-CGCCGCGc---UCGa -3' miRNA: 3'- gCUGUU----AGCGCuGCGGCGCuuauAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 17687 | 0.68 | 0.866474 |
Target: 5'- gCGAUcGUgCGCGACGCCcUGAAUcUCGc -3' miRNA: 3'- -GCUGuUA-GCGCUGCGGcGCUUAuAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 9673 | 0.69 | 0.803605 |
Target: 5'- uCGACGAUCGCaGCGUCGCagcaGUCa -3' miRNA: 3'- -GCUGUUAGCGcUGCGGCGcuuaUAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 47806 | 0.69 | 0.7938 |
Target: 5'- gGGCGAgcgcuUgGCGGCGCUGCGAuggGUGcUCGg -3' miRNA: 3'- gCUGUU-----AgCGCUGCGGCGCU---UAU-AGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 50126 | 0.69 | 0.813225 |
Target: 5'- uGACGGUcCGCGACGaCCaGCGAGUu--- -3' miRNA: 3'- gCUGUUA-GCGCUGC-GG-CGCUUAuagc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 14601 | 0.69 | 0.7938 |
Target: 5'- gGACGccggaguugGUCGCGACGCaCGUGGcgGUUc -3' miRNA: 3'- gCUGU---------UAGCGCUGCG-GCGCUuaUAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 3566 | 0.69 | 0.831866 |
Target: 5'- aCGACAcgUGCaGCGCUugGCGAGUgcuAUCGa -3' miRNA: 3'- -GCUGUuaGCGcUGCGG--CGCUUA---UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 12264 | 0.7 | 0.773679 |
Target: 5'- aCGGCGAguUCGUGguccGCGCCGCaguGGUGUCGc -3' miRNA: 3'- -GCUGUU--AGCGC----UGCGGCGc--UUAUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 31089 | 0.7 | 0.78382 |
Target: 5'- uCGACAGgaaGCGuACGCgCGCGggUAcugCGa -3' miRNA: 3'- -GCUGUUag-CGC-UGCG-GCGCuuAUa--GC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 48011 | 0.7 | 0.78382 |
Target: 5'- -cGCGggCGUGACGCgCGUGAccGUGUCGu -3' miRNA: 3'- gcUGUuaGCGCUGCG-GCGCU--UAUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 19029 | 0.7 | 0.763386 |
Target: 5'- gCGGCGAUCGCcgagggcgauauGGCgGUCGCGAAgaaaGUCGa -3' miRNA: 3'- -GCUGUUAGCG------------CUG-CGGCGCUUa---UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 29874 | 0.7 | 0.741333 |
Target: 5'- -cGCGAUgGuCGGCGCCggcguguuccaagGCGAAUGUCGa -3' miRNA: 3'- gcUGUUAgC-GCUGCGG-------------CGCUUAUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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