miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 9351 1.1 0.003105
Target:  5'- cCGACAAUCGCGACGCCGCGAAUAUCGu -3'
miRNA:   3'- -GCUGUUAGCGCUGCGGCGCUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 45431 0.88 0.079482
Target:  5'- gCGACGAuauUCGCGGCGUCGCGAuUGUCGg -3'
miRNA:   3'- -GCUGUU---AGCGCUGCGGCGCUuAUAGC- -5'
24887 3' -51 NC_005284.1 + 9592 0.76 0.439644
Target:  5'- gGGCGAUCGCGcUGCCGCGGcgG-CGa -3'
miRNA:   3'- gCUGUUAGCGCuGCGGCGCUuaUaGC- -5'
24887 3' -51 NC_005284.1 + 45113 0.76 0.439644
Target:  5'- uGACugcUGCGACGCUGCGAucGUCGa -3'
miRNA:   3'- gCUGuuaGCGCUGCGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 23574 0.75 0.469783
Target:  5'- uCGGCAacGUCGCGGCGaugcuaCGCGAG-AUCGg -3'
miRNA:   3'- -GCUGU--UAGCGCUGCg-----GCGCUUaUAGC- -5'
24887 3' -51 NC_005284.1 + 17782 0.75 0.480062
Target:  5'- gGACGAgguaaagGCGaACGCCGCGAAgGUCGg -3'
miRNA:   3'- gCUGUUag-----CGC-UGCGGCGCUUaUAGC- -5'
24887 3' -51 NC_005284.1 + 50117 0.75 0.500941
Target:  5'- gCGGCGAUCGCGcACGCgGCGu---UCGc -3'
miRNA:   3'- -GCUGUUAGCGC-UGCGgCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 14512 0.74 0.51153
Target:  5'- cCGACGcgcagcagccAUCGcCGACGCUGCGggUGggCGa -3'
miRNA:   3'- -GCUGU----------UAGC-GCUGCGGCGCuuAUa-GC- -5'
24887 3' -51 NC_005284.1 + 36838 0.74 0.531897
Target:  5'- uGGCGAUCGCGACuugcuuuGCCGCGuccgccUCGg -3'
miRNA:   3'- gCUGUUAGCGCUG-------CGGCGCuuau--AGC- -5'
24887 3' -51 NC_005284.1 + 25960 0.74 0.554736
Target:  5'- aCGugGAUCGCGAgGCCG-GggUAauUCa -3'
miRNA:   3'- -GCugUUAGCGCUgCGGCgCuuAU--AGc -5'
24887 3' -51 NC_005284.1 + 12348 0.74 0.554736
Target:  5'- cCGGCuucgCGCGAuuCGCCGCGggUGggcUCGu -3'
miRNA:   3'- -GCUGuua-GCGCU--GCGGCGCuuAU---AGC- -5'
24887 3' -51 NC_005284.1 + 31149 0.72 0.621267
Target:  5'- cCGuACAGUgccCGUGACGCgGuCGGAUAUCGg -3'
miRNA:   3'- -GC-UGUUA---GCGCUGCGgC-GCUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 50664 0.72 0.665936
Target:  5'- aGAC-AUCGCgGACGUgGCGGAauUAUCGu -3'
miRNA:   3'- gCUGuUAGCG-CUGCGgCGCUU--AUAGC- -5'
24887 3' -51 NC_005284.1 + 5977 0.71 0.677049
Target:  5'- cCGAUcGUCGCGACGauGCGAu--UCGg -3'
miRNA:   3'- -GCUGuUAGCGCUGCggCGCUuauAGC- -5'
24887 3' -51 NC_005284.1 + 20654 0.71 0.687013
Target:  5'- cCGACAucccaauGUCGCaACGUuuCGCGAAUGUUGg -3'
miRNA:   3'- -GCUGU-------UAGCGcUGCG--GCGCUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 8372 0.71 0.720945
Target:  5'- gCGAUGAUCGCGGCGgCgGCGuuucaGUCGc -3'
miRNA:   3'- -GCUGUUAGCGCUGC-GgCGCuua--UAGC- -5'
24887 3' -51 NC_005284.1 + 29874 0.7 0.741333
Target:  5'- -cGCGAUgGuCGGCGCCggcguguuccaagGCGAAUGUCGa -3'
miRNA:   3'- gcUGUUAgC-GCUGCGG-------------CGCUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 38691 0.7 0.742396
Target:  5'- aCGGCAAcgagUGCGGCGCCGaGAAUcgUGu -3'
miRNA:   3'- -GCUGUUa---GCGCUGCGGCgCUUAuaGC- -5'
24887 3' -51 NC_005284.1 + 1790 0.7 0.752954
Target:  5'- gCGGCAAaCGCGAUGCCcaccGCGAuUGccUCGg -3'
miRNA:   3'- -GCUGUUaGCGCUGCGG----CGCUuAU--AGC- -5'
24887 3' -51 NC_005284.1 + 19029 0.7 0.763386
Target:  5'- gCGGCGAUCGCcgagggcgauauGGCgGUCGCGAAgaaaGUCGa -3'
miRNA:   3'- -GCUGUUAGCG------------CUG-CGGCGCUUa---UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.