Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24887 | 3' | -51 | NC_005284.1 | + | 46842 | 0.68 | 0.858179 |
Target: 5'- uCGAUGAUCGaug-GCCGCGAAuUAUCGc -3' miRNA: 3'- -GCUGUUAGCgcugCGGCGCUU-AUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 17687 | 0.68 | 0.866474 |
Target: 5'- gCGAUcGUgCGCGACGCCcUGAAUcUCGc -3' miRNA: 3'- -GCUGuUA-GCGCUGCGGcGCUUAuAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 24668 | 0.68 | 0.874517 |
Target: 5'- gCGuGCAGUCGaCGugauaGCCGCGAAUcgUGa -3' miRNA: 3'- -GC-UGUUAGC-GCug---CGGCGCUUAuaGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 22866 | 0.68 | 0.874517 |
Target: 5'- gCGGCGGgaagggCGuCGAgCGCCGCGAGcugAUCa -3' miRNA: 3'- -GCUGUUa-----GC-GCU-GCGGCGCUUa--UAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 17945 | 0.67 | 0.881535 |
Target: 5'- cCGACAAUCgccgccgGCGACGCUucacgGCGAuucugccGUCGg -3' miRNA: 3'- -GCUGUUAG-------CGCUGCGG-----CGCUua-----UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 31616 | 0.67 | 0.882302 |
Target: 5'- -cACAcgaGCGgaacGCGCCGCGAcgAUCGg -3' miRNA: 3'- gcUGUuagCGC----UGCGGCGCUuaUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 31481 | 0.67 | 0.882302 |
Target: 5'- -cGCAguuccGUCGaCGACGCCGgGAuacacgccgAUAUCGg -3' miRNA: 3'- gcUGU-----UAGC-GCUGCGGCgCU---------UAUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 37373 | 0.67 | 0.889821 |
Target: 5'- uCGACGu---UGACGCCGCGGucGUCGc -3' miRNA: 3'- -GCUGUuagcGCUGCGGCGCUuaUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 47750 | 0.67 | 0.889821 |
Target: 5'- aCGGCGGcgCGCGuACGuCCGCGuAAgcagAUCGa -3' miRNA: 3'- -GCUGUUa-GCGC-UGC-GGCGC-UUa---UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 41596 | 0.67 | 0.889821 |
Target: 5'- aCGuACGcgCGCGAgGCCGCgccGAGUG-CGa -3' miRNA: 3'- -GC-UGUuaGCGCUgCGGCG---CUUAUaGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 10646 | 0.67 | 0.889821 |
Target: 5'- gCGGCGAagcgcugCGCGaggaacuggugcGCGCCGCGGGcgcgAUCGa -3' miRNA: 3'- -GCUGUUa------GCGC------------UGCGGCGCUUa---UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 10084 | 0.67 | 0.889821 |
Target: 5'- gCGGCGAcCGCGAcCGCgGCGG--GUCu -3' miRNA: 3'- -GCUGUUaGCGCU-GCGgCGCUuaUAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 6581 | 0.67 | 0.89707 |
Target: 5'- aGACAcGUaCGCGugGCCgcugcGCGAGcUGUCa -3' miRNA: 3'- gCUGU-UA-GCGCugCGG-----CGCUU-AUAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 37818 | 0.67 | 0.910739 |
Target: 5'- uCGGCGugaUGCGGCGCaCGCGGA--UCa -3' miRNA: 3'- -GCUGUua-GCGCUGCG-GCGCUUauAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 19254 | 0.67 | 0.910739 |
Target: 5'- gGACGcGUCGCGGCGUCGUaucagAUCa -3' miRNA: 3'- gCUGU-UAGCGCUGCGGCGcuua-UAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 39690 | 0.67 | 0.910739 |
Target: 5'- uCGACAa--GCG-CGCCGCGAGgcagaCGg -3' miRNA: 3'- -GCUGUuagCGCuGCGGCGCUUaua--GC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 37434 | 0.67 | 0.910739 |
Target: 5'- gGACGuuAUCGCaGCcgGCCGCGAGgaacAUCGu -3' miRNA: 3'- gCUGU--UAGCGcUG--CGGCGCUUa---UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 5213 | 0.66 | 0.915892 |
Target: 5'- uCGGCAAUCcggucaacgguaCGACGCCGCGccUGUgGa -3' miRNA: 3'- -GCUGUUAGc-----------GCUGCGGCGCuuAUAgC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 17342 | 0.66 | 0.917152 |
Target: 5'- cCGACGAuguuccUCGCGGCcgGCUGCGAuaacGUCc -3' miRNA: 3'- -GCUGUU------AGCGCUG--CGGCGCUua--UAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 41052 | 0.66 | 0.917152 |
Target: 5'- cCGACGuuucUCGCGggGCGCCGCGugccUCc -3' miRNA: 3'- -GCUGUu---AGCGC--UGCGGCGCuuauAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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