miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 12232 0.66 0.922681
Target:  5'- gCGGCAuUCaacauagcgaacaGCGGauaaGCCGCGAcgAUCGc -3'
miRNA:   3'- -GCUGUuAG-------------CGCUg---CGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 893 0.66 0.917152
Target:  5'- aCGGCaAAUCgGUGAuUGCCGCGGGcGUUGg -3'
miRNA:   3'- -GCUG-UUAG-CGCU-GCGGCGCUUaUAGC- -5'
24887 3' -51 NC_005284.1 + 18097 0.66 0.917152
Target:  5'- -cGCGAgcUCGCGGCGCaGC-AGUAUCGc -3'
miRNA:   3'- gcUGUU--AGCGCUGCGgCGcUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 41052 0.66 0.917152
Target:  5'- cCGACGuuucUCGCGggGCGCCGCGugccUCc -3'
miRNA:   3'- -GCUGUu---AGCGC--UGCGGCGCuuauAGc -5'
24887 3' -51 NC_005284.1 + 17342 0.66 0.917152
Target:  5'- cCGACGAuguuccUCGCGGCcgGCUGCGAuaacGUCc -3'
miRNA:   3'- -GCUGUU------AGCGCUG--CGGCGCUua--UAGc -5'
24887 3' -51 NC_005284.1 + 5213 0.66 0.915892
Target:  5'- uCGGCAAUCcggucaacgguaCGACGCCGCGccUGUgGa -3'
miRNA:   3'- -GCUGUUAGc-----------GCUGCGGCGCuuAUAgC- -5'
24887 3' -51 NC_005284.1 + 39690 0.67 0.910739
Target:  5'- uCGACAa--GCG-CGCCGCGAGgcagaCGg -3'
miRNA:   3'- -GCUGUuagCGCuGCGGCGCUUaua--GC- -5'
24887 3' -51 NC_005284.1 + 37434 0.67 0.910739
Target:  5'- gGACGuuAUCGCaGCcgGCCGCGAGgaacAUCGu -3'
miRNA:   3'- gCUGU--UAGCGcUG--CGGCGCUUa---UAGC- -5'
24887 3' -51 NC_005284.1 + 19254 0.67 0.910739
Target:  5'- gGACGcGUCGCGGCGUCGUaucagAUCa -3'
miRNA:   3'- gCUGU-UAGCGCUGCGGCGcuua-UAGc -5'
24887 3' -51 NC_005284.1 + 37818 0.67 0.910739
Target:  5'- uCGGCGugaUGCGGCGCaCGCGGA--UCa -3'
miRNA:   3'- -GCUGUua-GCGCUGCG-GCGCUUauAGc -5'
24887 3' -51 NC_005284.1 + 6581 0.67 0.89707
Target:  5'- aGACAcGUaCGCGugGCCgcugcGCGAGcUGUCa -3'
miRNA:   3'- gCUGU-UA-GCGCugCGG-----CGCUU-AUAGc -5'
24887 3' -51 NC_005284.1 + 47750 0.67 0.889821
Target:  5'- aCGGCGGcgCGCGuACGuCCGCGuAAgcagAUCGa -3'
miRNA:   3'- -GCUGUUa-GCGC-UGC-GGCGC-UUa---UAGC- -5'
24887 3' -51 NC_005284.1 + 10084 0.67 0.889821
Target:  5'- gCGGCGAcCGCGAcCGCgGCGG--GUCu -3'
miRNA:   3'- -GCUGUUaGCGCU-GCGgCGCUuaUAGc -5'
24887 3' -51 NC_005284.1 + 10646 0.67 0.889821
Target:  5'- gCGGCGAagcgcugCGCGaggaacuggugcGCGCCGCGGGcgcgAUCGa -3'
miRNA:   3'- -GCUGUUa------GCGC------------UGCGGCGCUUa---UAGC- -5'
24887 3' -51 NC_005284.1 + 37373 0.67 0.889821
Target:  5'- uCGACGu---UGACGCCGCGGucGUCGc -3'
miRNA:   3'- -GCUGUuagcGCUGCGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 41596 0.67 0.889821
Target:  5'- aCGuACGcgCGCGAgGCCGCgccGAGUG-CGa -3'
miRNA:   3'- -GC-UGUuaGCGCUgCGGCG---CUUAUaGC- -5'
24887 3' -51 NC_005284.1 + 31616 0.67 0.882302
Target:  5'- -cACAcgaGCGgaacGCGCCGCGAcgAUCGg -3'
miRNA:   3'- gcUGUuagCGC----UGCGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 31481 0.67 0.882302
Target:  5'- -cGCAguuccGUCGaCGACGCCGgGAuacacgccgAUAUCGg -3'
miRNA:   3'- gcUGU-----UAGC-GCUGCGGCgCU---------UAUAGC- -5'
24887 3' -51 NC_005284.1 + 17945 0.67 0.881535
Target:  5'- cCGACAAUCgccgccgGCGACGCUucacgGCGAuucugccGUCGg -3'
miRNA:   3'- -GCUGUUAG-------CGCUGCGG-----CGCUua-----UAGC- -5'
24887 3' -51 NC_005284.1 + 22866 0.68 0.874517
Target:  5'- gCGGCGGgaagggCGuCGAgCGCCGCGAGcugAUCa -3'
miRNA:   3'- -GCUGUUa-----GC-GCU-GCGGCGCUUa--UAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.