miRNA display CGI


Results 41 - 60 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 22866 0.68 0.874517
Target:  5'- gCGGCGGgaagggCGuCGAgCGCCGCGAGcugAUCa -3'
miRNA:   3'- -GCUGUUa-----GC-GCU-GCGGCGCUUa--UAGc -5'
24887 3' -51 NC_005284.1 + 17687 0.68 0.866474
Target:  5'- gCGAUcGUgCGCGACGCCcUGAAUcUCGc -3'
miRNA:   3'- -GCUGuUA-GCGCUGCGGcGCUUAuAGC- -5'
24887 3' -51 NC_005284.1 + 4987 0.68 0.858179
Target:  5'- uCGACuccugAAUCGUGAUGCCGUGcuc-UCGg -3'
miRNA:   3'- -GCUG-----UUAGCGCUGCGGCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 32980 0.68 0.858179
Target:  5'- gGGCAcgccGUCGCcaccGGCuGCCGUGcAGUGUCGg -3'
miRNA:   3'- gCUGU----UAGCG----CUG-CGGCGC-UUAUAGC- -5'
24887 3' -51 NC_005284.1 + 11401 0.68 0.858179
Target:  5'- uCGACAG-CGCGggacuugacGCGCUGCGucgAUCGc -3'
miRNA:   3'- -GCUGUUaGCGC---------UGCGGCGCuuaUAGC- -5'
24887 3' -51 NC_005284.1 + 36097 0.68 0.858179
Target:  5'- aGAacuuGGUCGCGuCGUCGCGAu--UCGg -3'
miRNA:   3'- gCUg---UUAGCGCuGCGGCGCUuauAGC- -5'
24887 3' -51 NC_005284.1 + 46842 0.68 0.858179
Target:  5'- uCGAUGAUCGaug-GCCGCGAAuUAUCGc -3'
miRNA:   3'- -GCUGUUAGCgcugCGGCGCUU-AUAGC- -5'
24887 3' -51 NC_005284.1 + 42033 0.68 0.848773
Target:  5'- uCGAUGAUCGCGGCaaccuucGCCGCGu-UAcCGa -3'
miRNA:   3'- -GCUGUUAGCGCUG-------CGGCGCuuAUaGC- -5'
24887 3' -51 NC_005284.1 + 47947 0.68 0.840866
Target:  5'- aCGAuCGAUCGCGcGCGCCaacucgguGCGAAUcgCc -3'
miRNA:   3'- -GCU-GUUAGCGC-UGCGG--------CGCUUAuaGc -5'
24887 3' -51 NC_005284.1 + 21613 0.68 0.840866
Target:  5'- gGGCAAgaucUCGCG-CGCCGCGc---UCGa -3'
miRNA:   3'- gCUGUU----AGCGCuGCGGCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 3566 0.69 0.831866
Target:  5'- aCGACAcgUGCaGCGCUugGCGAGUgcuAUCGa -3'
miRNA:   3'- -GCUGUuaGCGcUGCGG--CGCUUA---UAGC- -5'
24887 3' -51 NC_005284.1 + 50126 0.69 0.813225
Target:  5'- uGACGGUcCGCGACGaCCaGCGAGUu--- -3'
miRNA:   3'- gCUGUUA-GCGCUGC-GG-CGCUUAuagc -5'
24887 3' -51 NC_005284.1 + 9673 0.69 0.803605
Target:  5'- uCGACGAUCGCaGCGUCGCagcaGUCa -3'
miRNA:   3'- -GCUGUUAGCGcUGCGGCGcuuaUAGc -5'
24887 3' -51 NC_005284.1 + 47806 0.69 0.7938
Target:  5'- gGGCGAgcgcuUgGCGGCGCUGCGAuggGUGcUCGg -3'
miRNA:   3'- gCUGUU-----AgCGCUGCGGCGCU---UAU-AGC- -5'
24887 3' -51 NC_005284.1 + 14601 0.69 0.7938
Target:  5'- gGACGccggaguugGUCGCGACGCaCGUGGcgGUUc -3'
miRNA:   3'- gCUGU---------UAGCGCUGCG-GCGCUuaUAGc -5'
24887 3' -51 NC_005284.1 + 31089 0.7 0.78382
Target:  5'- uCGACAGgaaGCGuACGCgCGCGggUAcugCGa -3'
miRNA:   3'- -GCUGUUag-CGC-UGCG-GCGCuuAUa--GC- -5'
24887 3' -51 NC_005284.1 + 48011 0.7 0.78382
Target:  5'- -cGCGggCGUGACGCgCGUGAccGUGUCGu -3'
miRNA:   3'- gcUGUuaGCGCUGCG-GCGCU--UAUAGC- -5'
24887 3' -51 NC_005284.1 + 33149 0.7 0.78382
Target:  5'- gCGGCGAUCGC-ACGCUGCucggcGUCGa -3'
miRNA:   3'- -GCUGUUAGCGcUGCGGCGcuua-UAGC- -5'
24887 3' -51 NC_005284.1 + 39295 0.7 0.773679
Target:  5'- uCGGguAaCGCGACGCCGCGc---UCGg -3'
miRNA:   3'- -GCUguUaGCGCUGCGGCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 12264 0.7 0.773679
Target:  5'- aCGGCGAguUCGUGguccGCGCCGCaguGGUGUCGc -3'
miRNA:   3'- -GCUGUU--AGCGC----UGCGGCGc--UUAUAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.