miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 893 0.66 0.917152
Target:  5'- aCGGCaAAUCgGUGAuUGCCGCGGGcGUUGg -3'
miRNA:   3'- -GCUG-UUAG-CGCU-GCGGCGCUUaUAGC- -5'
24887 3' -51 NC_005284.1 + 1790 0.7 0.752954
Target:  5'- gCGGCAAaCGCGAUGCCcaccGCGAuUGccUCGg -3'
miRNA:   3'- -GCUGUUaGCGCUGCGG----CGCUuAU--AGC- -5'
24887 3' -51 NC_005284.1 + 3566 0.69 0.831866
Target:  5'- aCGACAcgUGCaGCGCUugGCGAGUgcuAUCGa -3'
miRNA:   3'- -GCUGUuaGCGcUGCGG--CGCUUA---UAGC- -5'
24887 3' -51 NC_005284.1 + 4987 0.68 0.858179
Target:  5'- uCGACuccugAAUCGUGAUGCCGUGcuc-UCGg -3'
miRNA:   3'- -GCUG-----UUAGCGCUGCGGCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 5213 0.66 0.915892
Target:  5'- uCGGCAAUCcggucaacgguaCGACGCCGCGccUGUgGa -3'
miRNA:   3'- -GCUGUUAGc-----------GCUGCGGCGCuuAUAgC- -5'
24887 3' -51 NC_005284.1 + 5977 0.71 0.677049
Target:  5'- cCGAUcGUCGCGACGauGCGAu--UCGg -3'
miRNA:   3'- -GCUGuUAGCGCUGCggCGCUuauAGC- -5'
24887 3' -51 NC_005284.1 + 6581 0.67 0.89707
Target:  5'- aGACAcGUaCGCGugGCCgcugcGCGAGcUGUCa -3'
miRNA:   3'- gCUGU-UA-GCGCugCGG-----CGCUU-AUAGc -5'
24887 3' -51 NC_005284.1 + 6778 0.66 0.929124
Target:  5'- aCGGuCAcgCGCGucACGcCCGCGAAUuccgcaauggcGUCGa -3'
miRNA:   3'- -GCU-GUuaGCGC--UGC-GGCGCUUA-----------UAGC- -5'
24887 3' -51 NC_005284.1 + 6828 0.66 0.929124
Target:  5'- gGGCGAuUCGCaccgaguuGGCGCgCGCGAucgAUCGu -3'
miRNA:   3'- gCUGUU-AGCG--------CUGCG-GCGCUua-UAGC- -5'
24887 3' -51 NC_005284.1 + 8095 0.66 0.929124
Target:  5'- aCGACGAUgcaacCGCGGuCGCgGCGGcguUCGg -3'
miRNA:   3'- -GCUGUUA-----GCGCU-GCGgCGCUuauAGC- -5'
24887 3' -51 NC_005284.1 + 8372 0.71 0.720945
Target:  5'- gCGAUGAUCGCGGCGgCgGCGuuucaGUCGc -3'
miRNA:   3'- -GCUGUUAGCGCUGC-GgCGCuua--UAGC- -5'
24887 3' -51 NC_005284.1 + 9015 0.66 0.929124
Target:  5'- aGGCGGUCGCGuuGUCGgGuGUcUCGg -3'
miRNA:   3'- gCUGUUAGCGCugCGGCgCuUAuAGC- -5'
24887 3' -51 NC_005284.1 + 9351 1.1 0.003105
Target:  5'- cCGACAAUCGCGACGCCGCGAAUAUCGu -3'
miRNA:   3'- -GCUGUUAGCGCUGCGGCGCUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 9592 0.76 0.439644
Target:  5'- gGGCGAUCGCGcUGCCGCGGcgG-CGa -3'
miRNA:   3'- gCUGUUAGCGCuGCGGCGCUuaUaGC- -5'
24887 3' -51 NC_005284.1 + 9673 0.69 0.803605
Target:  5'- uCGACGAUCGCaGCGUCGCagcaGUCa -3'
miRNA:   3'- -GCUGUUAGCGcUGCGGCGcuuaUAGc -5'
24887 3' -51 NC_005284.1 + 10084 0.67 0.889821
Target:  5'- gCGGCGAcCGCGAcCGCgGCGG--GUCu -3'
miRNA:   3'- -GCUGUUaGCGCU-GCGgCGCUuaUAGc -5'
24887 3' -51 NC_005284.1 + 10646 0.67 0.889821
Target:  5'- gCGGCGAagcgcugCGCGaggaacuggugcGCGCCGCGGGcgcgAUCGa -3'
miRNA:   3'- -GCUGUUa------GCGC------------UGCGGCGCUUa---UAGC- -5'
24887 3' -51 NC_005284.1 + 11401 0.68 0.858179
Target:  5'- uCGACAG-CGCGggacuugacGCGCUGCGucgAUCGc -3'
miRNA:   3'- -GCUGUUaGCGC---------UGCGGCGCuuaUAGC- -5'
24887 3' -51 NC_005284.1 + 12232 0.66 0.922681
Target:  5'- gCGGCAuUCaacauagcgaacaGCGGauaaGCCGCGAcgAUCGc -3'
miRNA:   3'- -GCUGUuAG-------------CGCUg---CGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 12264 0.7 0.773679
Target:  5'- aCGGCGAguUCGUGguccGCGCCGCaguGGUGUCGc -3'
miRNA:   3'- -GCUGUU--AGCGC----UGCGGCGc--UUAUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.