miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 54639 0.66 0.929124
Target:  5'- aCGACGAgaaccugcaaGCGAucUGCCGUGAcUGUCa -3'
miRNA:   3'- -GCUGUUag--------CGCU--GCGGCGCUuAUAGc -5'
24887 3' -51 NC_005284.1 + 50664 0.72 0.665936
Target:  5'- aGAC-AUCGCgGACGUgGCGGAauUAUCGu -3'
miRNA:   3'- gCUGuUAGCG-CUGCGgCGCUU--AUAGC- -5'
24887 3' -51 NC_005284.1 + 50126 0.69 0.813225
Target:  5'- uGACGGUcCGCGACGaCCaGCGAGUu--- -3'
miRNA:   3'- gCUGUUA-GCGCUGC-GG-CGCUUAuagc -5'
24887 3' -51 NC_005284.1 + 50117 0.75 0.500941
Target:  5'- gCGGCGAUCGCGcACGCgGCGu---UCGc -3'
miRNA:   3'- -GCUGUUAGCGC-UGCGgCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 48011 0.7 0.78382
Target:  5'- -cGCGggCGUGACGCgCGUGAccGUGUCGu -3'
miRNA:   3'- gcUGUuaGCGCUGCG-GCGCU--UAUAGC- -5'
24887 3' -51 NC_005284.1 + 47947 0.68 0.840866
Target:  5'- aCGAuCGAUCGCGcGCGCCaacucgguGCGAAUcgCc -3'
miRNA:   3'- -GCU-GUUAGCGC-UGCGG--------CGCUUAuaGc -5'
24887 3' -51 NC_005284.1 + 47806 0.69 0.7938
Target:  5'- gGGCGAgcgcuUgGCGGCGCUGCGAuggGUGcUCGg -3'
miRNA:   3'- gCUGUU-----AgCGCUGCGGCGCU---UAU-AGC- -5'
24887 3' -51 NC_005284.1 + 47750 0.67 0.889821
Target:  5'- aCGGCGGcgCGCGuACGuCCGCGuAAgcagAUCGa -3'
miRNA:   3'- -GCUGUUa-GCGC-UGC-GGCGC-UUa---UAGC- -5'
24887 3' -51 NC_005284.1 + 47580 0.66 0.934683
Target:  5'- uGGCGGUgCGUGACGCUGuUGAGg--CGg -3'
miRNA:   3'- gCUGUUA-GCGCUGCGGC-GCUUauaGC- -5'
24887 3' -51 NC_005284.1 + 46842 0.68 0.858179
Target:  5'- uCGAUGAUCGaug-GCCGCGAAuUAUCGc -3'
miRNA:   3'- -GCUGUUAGCgcugCGGCGCUU-AUAGC- -5'
24887 3' -51 NC_005284.1 + 45431 0.88 0.079482
Target:  5'- gCGACGAuauUCGCGGCGUCGCGAuUGUCGg -3'
miRNA:   3'- -GCUGUU---AGCGCUGCGGCGCUuAUAGC- -5'
24887 3' -51 NC_005284.1 + 45113 0.76 0.439644
Target:  5'- uGACugcUGCGACGCUGCGAucGUCGa -3'
miRNA:   3'- gCUGuuaGCGCUGCGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 44711 0.7 0.763386
Target:  5'- -cGCGGUCGCGGuCGCCGCGcGUuccgcUCGc -3'
miRNA:   3'- gcUGUUAGCGCU-GCGGCGCuUAu----AGC- -5'
24887 3' -51 NC_005284.1 + 44506 0.66 0.939957
Target:  5'- uCGAC-GUCGCGcUGCuCGCGu-UGUCGc -3'
miRNA:   3'- -GCUGuUAGCGCuGCG-GCGCuuAUAGC- -5'
24887 3' -51 NC_005284.1 + 44466 0.66 0.939442
Target:  5'- uCGAUGAUCugaucgaGCGGCGCCuGC--AUGUCGa -3'
miRNA:   3'- -GCUGUUAG-------CGCUGCGG-CGcuUAUAGC- -5'
24887 3' -51 NC_005284.1 + 44123 0.66 0.939957
Target:  5'- aCGACAa--GUG-CGCUGUGAcgAUCGa -3'
miRNA:   3'- -GCUGUuagCGCuGCGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 42033 0.68 0.848773
Target:  5'- uCGAUGAUCGCGGCaaccuucGCCGCGu-UAcCGa -3'
miRNA:   3'- -GCUGUUAGCGCUG-------CGGCGCuuAUaGC- -5'
24887 3' -51 NC_005284.1 + 41596 0.67 0.889821
Target:  5'- aCGuACGcgCGCGAgGCCGCgccGAGUG-CGa -3'
miRNA:   3'- -GC-UGUuaGCGCUgCGGCG---CUUAUaGC- -5'
24887 3' -51 NC_005284.1 + 41052 0.66 0.917152
Target:  5'- cCGACGuuucUCGCGggGCGCCGCGugccUCc -3'
miRNA:   3'- -GCUGUu---AGCGC--UGCGGCGCuuauAGc -5'
24887 3' -51 NC_005284.1 + 39690 0.67 0.910739
Target:  5'- uCGACAa--GCG-CGCCGCGAGgcagaCGg -3'
miRNA:   3'- -GCUGUuagCGCuGCGGCGCUUaua--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.