miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 39295 0.7 0.773679
Target:  5'- uCGGguAaCGCGACGCCGCGc---UCGg -3'
miRNA:   3'- -GCUguUaGCGCUGCGGCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 38745 0.66 0.934683
Target:  5'- cCGACGAUUacCGGCGCaauGCGGAUcUCGu -3'
miRNA:   3'- -GCUGUUAGc-GCUGCGg--CGCUUAuAGC- -5'
24887 3' -51 NC_005284.1 + 38691 0.7 0.742396
Target:  5'- aCGGCAAcgagUGCGGCGCCGaGAAUcgUGu -3'
miRNA:   3'- -GCUGUUa---GCGCUGCGGCgCUUAuaGC- -5'
24887 3' -51 NC_005284.1 + 37818 0.67 0.910739
Target:  5'- uCGGCGugaUGCGGCGCaCGCGGA--UCa -3'
miRNA:   3'- -GCUGUua-GCGCUGCG-GCGCUUauAGc -5'
24887 3' -51 NC_005284.1 + 37434 0.67 0.910739
Target:  5'- gGACGuuAUCGCaGCcgGCCGCGAGgaacAUCGu -3'
miRNA:   3'- gCUGU--UAGCGcUG--CGGCGCUUa---UAGC- -5'
24887 3' -51 NC_005284.1 + 37373 0.67 0.889821
Target:  5'- uCGACGu---UGACGCCGCGGucGUCGc -3'
miRNA:   3'- -GCUGUuagcGCUGCGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 36838 0.74 0.531897
Target:  5'- uGGCGAUCGCGACuugcuuuGCCGCGuccgccUCGg -3'
miRNA:   3'- gCUGUUAGCGCUG-------CGGCGCuuau--AGC- -5'
24887 3' -51 NC_005284.1 + 36354 0.66 0.934683
Target:  5'- --uCGAUCGCGcCgGCCGCGAcgAUGuUCGa -3'
miRNA:   3'- gcuGUUAGCGCuG-CGGCGCU--UAU-AGC- -5'
24887 3' -51 NC_005284.1 + 36097 0.68 0.858179
Target:  5'- aGAacuuGGUCGCGuCGUCGCGAu--UCGg -3'
miRNA:   3'- gCUg---UUAGCGCuGCGGCGCUuauAGC- -5'
24887 3' -51 NC_005284.1 + 36064 0.66 0.923281
Target:  5'- aCGACGu---CGACGCCuGCGGAUAcgCGa -3'
miRNA:   3'- -GCUGUuagcGCUGCGG-CGCUUAUa-GC- -5'
24887 3' -51 NC_005284.1 + 33149 0.7 0.78382
Target:  5'- gCGGCGAUCGC-ACGCUGCucggcGUCGa -3'
miRNA:   3'- -GCUGUUAGCGcUGCGGCGcuua-UAGC- -5'
24887 3' -51 NC_005284.1 + 32980 0.68 0.858179
Target:  5'- gGGCAcgccGUCGCcaccGGCuGCCGUGcAGUGUCGg -3'
miRNA:   3'- gCUGU----UAGCG----CUG-CGGCGC-UUAUAGC- -5'
24887 3' -51 NC_005284.1 + 32025 0.66 0.923281
Target:  5'- uGACGAUCGCG-CGCC-CcuugAUCGa -3'
miRNA:   3'- gCUGUUAGCGCuGCGGcGcuuaUAGC- -5'
24887 3' -51 NC_005284.1 + 31616 0.67 0.882302
Target:  5'- -cACAcgaGCGgaacGCGCCGCGAcgAUCGg -3'
miRNA:   3'- gcUGUuagCGC----UGCGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 31481 0.67 0.882302
Target:  5'- -cGCAguuccGUCGaCGACGCCGgGAuacacgccgAUAUCGg -3'
miRNA:   3'- gcUGU-----UAGC-GCUGCGGCgCU---------UAUAGC- -5'
24887 3' -51 NC_005284.1 + 31158 0.66 0.923281
Target:  5'- uGACGAUCGUcGCGCCGauccaGAcguUAUCc -3'
miRNA:   3'- gCUGUUAGCGcUGCGGCg----CUu--AUAGc -5'
24887 3' -51 NC_005284.1 + 31149 0.72 0.621267
Target:  5'- cCGuACAGUgccCGUGACGCgGuCGGAUAUCGg -3'
miRNA:   3'- -GC-UGUUA---GCGCUGCGgC-GCUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 31089 0.7 0.78382
Target:  5'- uCGACAGgaaGCGuACGCgCGCGggUAcugCGa -3'
miRNA:   3'- -GCUGUUag-CGC-UGCG-GCGCuuAUa--GC- -5'
24887 3' -51 NC_005284.1 + 29874 0.7 0.741333
Target:  5'- -cGCGAUgGuCGGCGCCggcguguuccaagGCGAAUGUCGa -3'
miRNA:   3'- gcUGUUAgC-GCUGCGG-------------CGCUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 29706 0.66 0.939957
Target:  5'- uGACGAUCGCGAggucgGCCgGCGuc-AUCa -3'
miRNA:   3'- gCUGUUAGCGCUg----CGG-CGCuuaUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.