miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 25960 0.74 0.554736
Target:  5'- aCGugGAUCGCGAgGCCG-GggUAauUCa -3'
miRNA:   3'- -GCugUUAGCGCUgCGGCgCuuAU--AGc -5'
24887 3' -51 NC_005284.1 + 24668 0.68 0.874517
Target:  5'- gCGuGCAGUCGaCGugauaGCCGCGAAUcgUGa -3'
miRNA:   3'- -GC-UGUUAGC-GCug---CGGCGCUUAuaGC- -5'
24887 3' -51 NC_005284.1 + 23574 0.75 0.469783
Target:  5'- uCGGCAacGUCGCGGCGaugcuaCGCGAG-AUCGg -3'
miRNA:   3'- -GCUGU--UAGCGCUGCg-----GCGCUUaUAGC- -5'
24887 3' -51 NC_005284.1 + 22866 0.68 0.874517
Target:  5'- gCGGCGGgaagggCGuCGAgCGCCGCGAGcugAUCa -3'
miRNA:   3'- -GCUGUUa-----GC-GCU-GCGGCGCUUa--UAGc -5'
24887 3' -51 NC_005284.1 + 21613 0.68 0.840866
Target:  5'- gGGCAAgaucUCGCG-CGCCGCGc---UCGa -3'
miRNA:   3'- gCUGUU----AGCGCuGCGGCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 20820 0.66 0.934683
Target:  5'- gCGuCGGUCGCGuCGUCGCuuacguugaccGAUAUCGg -3'
miRNA:   3'- -GCuGUUAGCGCuGCGGCGc----------UUAUAGC- -5'
24887 3' -51 NC_005284.1 + 20654 0.71 0.687013
Target:  5'- cCGACAucccaauGUCGCaACGUuuCGCGAAUGUUGg -3'
miRNA:   3'- -GCUGU-------UAGCGcUGCG--GCGCUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 20150 0.7 0.773679
Target:  5'- gCGGCAGaCGUGGaggGCCGCGAAUAa-- -3'
miRNA:   3'- -GCUGUUaGCGCUg--CGGCGCUUAUagc -5'
24887 3' -51 NC_005284.1 + 19254 0.67 0.910739
Target:  5'- gGACGcGUCGCGGCGUCGUaucagAUCa -3'
miRNA:   3'- gCUGU-UAGCGCUGCGGCGcuua-UAGc -5'
24887 3' -51 NC_005284.1 + 19029 0.7 0.763386
Target:  5'- gCGGCGAUCGCcgagggcgauauGGCgGUCGCGAAgaaaGUCGa -3'
miRNA:   3'- -GCUGUUAGCG------------CUG-CGGCGCUUa---UAGC- -5'
24887 3' -51 NC_005284.1 + 18205 0.66 0.939957
Target:  5'- gCGGCGAUCGaCGACGgCGCa------- -3'
miRNA:   3'- -GCUGUUAGC-GCUGCgGCGcuuauagc -5'
24887 3' -51 NC_005284.1 + 18097 0.66 0.917152
Target:  5'- -cGCGAgcUCGCGGCGCaGC-AGUAUCGc -3'
miRNA:   3'- gcUGUU--AGCGCUGCGgCGcUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 17945 0.67 0.881535
Target:  5'- cCGACAAUCgccgccgGCGACGCUucacgGCGAuucugccGUCGg -3'
miRNA:   3'- -GCUGUUAG-------CGCUGCGG-----CGCUua-----UAGC- -5'
24887 3' -51 NC_005284.1 + 17782 0.75 0.480062
Target:  5'- gGACGAgguaaagGCGaACGCCGCGAAgGUCGg -3'
miRNA:   3'- gCUGUUag-----CGC-UGCGGCGCUUaUAGC- -5'
24887 3' -51 NC_005284.1 + 17687 0.68 0.866474
Target:  5'- gCGAUcGUgCGCGACGCCcUGAAUcUCGc -3'
miRNA:   3'- -GCUGuUA-GCGCUGCGGcGCUUAuAGC- -5'
24887 3' -51 NC_005284.1 + 17342 0.66 0.917152
Target:  5'- cCGACGAuguuccUCGCGGCcgGCUGCGAuaacGUCc -3'
miRNA:   3'- -GCUGUU------AGCGCUG--CGGCGCUua--UAGc -5'
24887 3' -51 NC_005284.1 + 17006 0.66 0.929124
Target:  5'- gCGACGAUCGcCGACGCgaucaaCGuCGAGg--CGa -3'
miRNA:   3'- -GCUGUUAGC-GCUGCG------GC-GCUUauaGC- -5'
24887 3' -51 NC_005284.1 + 14601 0.69 0.7938
Target:  5'- gGACGccggaguugGUCGCGACGCaCGUGGcgGUUc -3'
miRNA:   3'- gCUGU---------UAGCGCUGCG-GCGCUuaUAGc -5'
24887 3' -51 NC_005284.1 + 14512 0.74 0.51153
Target:  5'- cCGACGcgcagcagccAUCGcCGACGCUGCGggUGggCGa -3'
miRNA:   3'- -GCUGU----------UAGC-GCUGCGGCGCuuAUa-GC- -5'
24887 3' -51 NC_005284.1 + 13786 0.66 0.936827
Target:  5'- gCGACGAUCGCcguuccagcaaugccGgggggaggaACGUCGCGAAUGUa- -3'
miRNA:   3'- -GCUGUUAGCG---------------C---------UGCGGCGCUUAUAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.