Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24887 | 3' | -51 | NC_005284.1 | + | 21613 | 0.68 | 0.840866 |
Target: 5'- gGGCAAgaucUCGCG-CGCCGCGc---UCGa -3' miRNA: 3'- gCUGUU----AGCGCuGCGGCGCuuauAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 47806 | 0.69 | 0.7938 |
Target: 5'- gGGCGAgcgcuUgGCGGCGCUGCGAuggGUGcUCGg -3' miRNA: 3'- gCUGUU-----AgCGCUGCGGCGCU---UAU-AGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 48011 | 0.7 | 0.78382 |
Target: 5'- -cGCGggCGUGACGCgCGUGAccGUGUCGu -3' miRNA: 3'- gcUGUuaGCGCUGCG-GCGCU--UAUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 31089 | 0.7 | 0.78382 |
Target: 5'- uCGACAGgaaGCGuACGCgCGCGggUAcugCGa -3' miRNA: 3'- -GCUGUUag-CGC-UGCG-GCGCuuAUa--GC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 12264 | 0.7 | 0.773679 |
Target: 5'- aCGGCGAguUCGUGguccGCGCCGCaguGGUGUCGc -3' miRNA: 3'- -GCUGUU--AGCGC----UGCGGCGc--UUAUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 19029 | 0.7 | 0.763386 |
Target: 5'- gCGGCGAUCGCcgagggcgauauGGCgGUCGCGAAgaaaGUCGa -3' miRNA: 3'- -GCUGUUAGCG------------CUG-CGGCGCUUa---UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 17342 | 0.66 | 0.917152 |
Target: 5'- cCGACGAuguuccUCGCGGCcgGCUGCGAuaacGUCc -3' miRNA: 3'- -GCUGUU------AGCGCUG--CGGCGCUua--UAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 37818 | 0.67 | 0.910739 |
Target: 5'- uCGGCGugaUGCGGCGCaCGCGGA--UCa -3' miRNA: 3'- -GCUGUua-GCGCUGCG-GCGCUUauAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 6581 | 0.67 | 0.89707 |
Target: 5'- aGACAcGUaCGCGugGCCgcugcGCGAGcUGUCa -3' miRNA: 3'- gCUGU-UA-GCGCugCGG-----CGCUU-AUAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 31481 | 0.67 | 0.882302 |
Target: 5'- -cGCAguuccGUCGaCGACGCCGgGAuacacgccgAUAUCGg -3' miRNA: 3'- gcUGU-----UAGC-GCUGCGGCgCU---------UAUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 31616 | 0.67 | 0.882302 |
Target: 5'- -cACAcgaGCGgaacGCGCCGCGAcgAUCGg -3' miRNA: 3'- gcUGUuagCGC----UGCGGCGCUuaUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 24668 | 0.68 | 0.874517 |
Target: 5'- gCGuGCAGUCGaCGugauaGCCGCGAAUcgUGa -3' miRNA: 3'- -GC-UGUUAGC-GCug---CGGCGCUUAuaGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 12232 | 0.66 | 0.922681 |
Target: 5'- gCGGCAuUCaacauagcgaacaGCGGauaaGCCGCGAcgAUCGc -3' miRNA: 3'- -GCUGUuAG-------------CGCUg---CGGCGCUuaUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 32025 | 0.66 | 0.923281 |
Target: 5'- uGACGAUCGCG-CGCC-CcuugAUCGa -3' miRNA: 3'- gCUGUUAGCGCuGCGGcGcuuaUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 36064 | 0.66 | 0.923281 |
Target: 5'- aCGACGu---CGACGCCuGCGGAUAcgCGa -3' miRNA: 3'- -GCUGUuagcGCUGCGG-CGCUUAUa-GC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 6778 | 0.66 | 0.929124 |
Target: 5'- aCGGuCAcgCGCGucACGcCCGCGAAUuccgcaauggcGUCGa -3' miRNA: 3'- -GCU-GUuaGCGC--UGC-GGCGCUUA-----------UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 38745 | 0.66 | 0.934683 |
Target: 5'- cCGACGAUUacCGGCGCaauGCGGAUcUCGu -3' miRNA: 3'- -GCUGUUAGc-GCUGCGg--CGCUUAuAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 13786 | 0.66 | 0.936827 |
Target: 5'- gCGACGAUCGCcguuccagcaaugccGgggggaggaACGUCGCGAAUGUa- -3' miRNA: 3'- -GCUGUUAGCG---------------C---------UGCGGCGCUUAUAgc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 44466 | 0.66 | 0.939442 |
Target: 5'- uCGAUGAUCugaucgaGCGGCGCCuGC--AUGUCGa -3' miRNA: 3'- -GCUGUUAG-------CGCUGCGG-CGcuUAUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 9351 | 1.1 | 0.003105 |
Target: 5'- cCGACAAUCGCGACGCCGCGAAUAUCGu -3' miRNA: 3'- -GCUGUUAGCGCUGCGGCGCUUAUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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