miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 44506 0.66 0.939957
Target:  5'- uCGAC-GUCGCGcUGCuCGCGu-UGUCGc -3'
miRNA:   3'- -GCUGuUAGCGCuGCG-GCGCuuAUAGC- -5'
24887 3' -51 NC_005284.1 + 4987 0.68 0.858179
Target:  5'- uCGACuccugAAUCGUGAUGCCGUGcuc-UCGg -3'
miRNA:   3'- -GCUG-----UUAGCGCUGCGGCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 42033 0.68 0.848773
Target:  5'- uCGAUGAUCGCGGCaaccuucGCCGCGu-UAcCGa -3'
miRNA:   3'- -GCUGUUAGCGCUG-------CGGCGCuuAUaGC- -5'
24887 3' -51 NC_005284.1 + 9351 1.1 0.003105
Target:  5'- cCGACAAUCGCGACGCCGCGAAUAUCGu -3'
miRNA:   3'- -GCUGUUAGCGCUGCGGCGCUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 6778 0.66 0.929124
Target:  5'- aCGGuCAcgCGCGucACGcCCGCGAAUuccgcaauggcGUCGa -3'
miRNA:   3'- -GCU-GUuaGCGC--UGC-GGCGCUUA-----------UAGC- -5'
24887 3' -51 NC_005284.1 + 36064 0.66 0.923281
Target:  5'- aCGACGu---CGACGCCuGCGGAUAcgCGa -3'
miRNA:   3'- -GCUGUuagcGCUGCGG-CGCUUAUa-GC- -5'
24887 3' -51 NC_005284.1 + 12232 0.66 0.922681
Target:  5'- gCGGCAuUCaacauagcgaacaGCGGauaaGCCGCGAcgAUCGc -3'
miRNA:   3'- -GCUGUuAG-------------CGCUg---CGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 17342 0.66 0.917152
Target:  5'- cCGACGAuguuccUCGCGGCcgGCUGCGAuaacGUCc -3'
miRNA:   3'- -GCUGUU------AGCGCUG--CGGCGCUua--UAGc -5'
24887 3' -51 NC_005284.1 + 31481 0.67 0.882302
Target:  5'- -cGCAguuccGUCGaCGACGCCGgGAuacacgccgAUAUCGg -3'
miRNA:   3'- gcUGU-----UAGC-GCUGCGGCgCU---------UAUAGC- -5'
24887 3' -51 NC_005284.1 + 11401 0.68 0.858179
Target:  5'- uCGACAG-CGCGggacuugacGCGCUGCGucgAUCGc -3'
miRNA:   3'- -GCUGUUaGCGC---------UGCGGCGCuuaUAGC- -5'
24887 3' -51 NC_005284.1 + 24668 0.68 0.874517
Target:  5'- gCGuGCAGUCGaCGugauaGCCGCGAAUcgUGa -3'
miRNA:   3'- -GC-UGUUAGC-GCug---CGGCGCUUAuaGC- -5'
24887 3' -51 NC_005284.1 + 6581 0.67 0.89707
Target:  5'- aGACAcGUaCGCGugGCCgcugcGCGAGcUGUCa -3'
miRNA:   3'- gCUGU-UA-GCGCugCGG-----CGCUU-AUAGc -5'
24887 3' -51 NC_005284.1 + 44466 0.66 0.939442
Target:  5'- uCGAUGAUCugaucgaGCGGCGCCuGC--AUGUCGa -3'
miRNA:   3'- -GCUGUUAG-------CGCUGCGG-CGcuUAUAGC- -5'
24887 3' -51 NC_005284.1 + 17687 0.68 0.866474
Target:  5'- gCGAUcGUgCGCGACGCCcUGAAUcUCGc -3'
miRNA:   3'- -GCUGuUA-GCGCUGCGGcGCUUAuAGC- -5'
24887 3' -51 NC_005284.1 + 13786 0.66 0.936827
Target:  5'- gCGACGAUCGCcguuccagcaaugccGgggggaggaACGUCGCGAAUGUa- -3'
miRNA:   3'- -GCUGUUAGCG---------------C---------UGCGGCGCUUAUAgc -5'
24887 3' -51 NC_005284.1 + 37818 0.67 0.910739
Target:  5'- uCGGCGugaUGCGGCGCaCGCGGA--UCa -3'
miRNA:   3'- -GCUGUua-GCGCUGCG-GCGCUUauAGc -5'
24887 3' -51 NC_005284.1 + 32980 0.68 0.858179
Target:  5'- gGGCAcgccGUCGCcaccGGCuGCCGUGcAGUGUCGg -3'
miRNA:   3'- gCUGU----UAGCG----CUG-CGGCGC-UUAUAGC- -5'
24887 3' -51 NC_005284.1 + 36097 0.68 0.858179
Target:  5'- aGAacuuGGUCGCGuCGUCGCGAu--UCGg -3'
miRNA:   3'- gCUg---UUAGCGCuGCGGCGCUuauAGC- -5'
24887 3' -51 NC_005284.1 + 38745 0.66 0.934683
Target:  5'- cCGACGAUUacCGGCGCaauGCGGAUcUCGu -3'
miRNA:   3'- -GCUGUUAGc-GCUGCGg--CGCUUAuAGC- -5'
24887 3' -51 NC_005284.1 + 32025 0.66 0.923281
Target:  5'- uGACGAUCGCG-CGCC-CcuugAUCGa -3'
miRNA:   3'- gCUGUUAGCGCuGCGGcGcuuaUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.