miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 6581 0.67 0.89707
Target:  5'- aGACAcGUaCGCGugGCCgcugcGCGAGcUGUCa -3'
miRNA:   3'- gCUGU-UA-GCGCugCGG-----CGCUU-AUAGc -5'
24887 3' -51 NC_005284.1 + 38745 0.66 0.934683
Target:  5'- cCGACGAUUacCGGCGCaauGCGGAUcUCGu -3'
miRNA:   3'- -GCUGUUAGc-GCUGCGg--CGCUUAuAGC- -5'
24887 3' -51 NC_005284.1 + 17782 0.75 0.480062
Target:  5'- gGACGAgguaaagGCGaACGCCGCGAAgGUCGg -3'
miRNA:   3'- gCUGUUag-----CGC-UGCGGCGCUUaUAGC- -5'
24887 3' -51 NC_005284.1 + 20150 0.7 0.773679
Target:  5'- gCGGCAGaCGUGGaggGCCGCGAAUAa-- -3'
miRNA:   3'- -GCUGUUaGCGCUg--CGGCGCUUAUagc -5'
24887 3' -51 NC_005284.1 + 4987 0.68 0.858179
Target:  5'- uCGACuccugAAUCGUGAUGCCGUGcuc-UCGg -3'
miRNA:   3'- -GCUG-----UUAGCGCUGCGGCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 13786 0.66 0.936827
Target:  5'- gCGACGAUCGCcguuccagcaaugccGgggggaggaACGUCGCGAAUGUa- -3'
miRNA:   3'- -GCUGUUAGCG---------------C---------UGCGGCGCUUAUAgc -5'
24887 3' -51 NC_005284.1 + 39295 0.7 0.773679
Target:  5'- uCGGguAaCGCGACGCCGCGc---UCGg -3'
miRNA:   3'- -GCUguUaGCGCUGCGGCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 44466 0.66 0.939442
Target:  5'- uCGAUGAUCugaucgaGCGGCGCCuGC--AUGUCGa -3'
miRNA:   3'- -GCUGUUAG-------CGCUGCGG-CGcuUAUAGC- -5'
24887 3' -51 NC_005284.1 + 44506 0.66 0.939957
Target:  5'- uCGAC-GUCGCGcUGCuCGCGu-UGUCGc -3'
miRNA:   3'- -GCUGuUAGCGCuGCG-GCGCuuAUAGC- -5'
24887 3' -51 NC_005284.1 + 36097 0.68 0.858179
Target:  5'- aGAacuuGGUCGCGuCGUCGCGAu--UCGg -3'
miRNA:   3'- gCUg---UUAGCGCuGCGGCGCUuauAGC- -5'
24887 3' -51 NC_005284.1 + 23574 0.75 0.469783
Target:  5'- uCGGCAacGUCGCGGCGaugcuaCGCGAG-AUCGg -3'
miRNA:   3'- -GCUGU--UAGCGCUGCg-----GCGCUUaUAGC- -5'
24887 3' -51 NC_005284.1 + 31481 0.67 0.882302
Target:  5'- -cGCAguuccGUCGaCGACGCCGgGAuacacgccgAUAUCGg -3'
miRNA:   3'- gcUGU-----UAGC-GCUGCGGCgCU---------UAUAGC- -5'
24887 3' -51 NC_005284.1 + 9673 0.69 0.803605
Target:  5'- uCGACGAUCGCaGCGUCGCagcaGUCa -3'
miRNA:   3'- -GCUGUUAGCGcUGCGGCGcuuaUAGc -5'
24887 3' -51 NC_005284.1 + 44711 0.7 0.763386
Target:  5'- -cGCGGUCGCGGuCGCCGCGcGUuccgcUCGc -3'
miRNA:   3'- gcUGUUAGCGCU-GCGGCGCuUAu----AGC- -5'
24887 3' -51 NC_005284.1 + 38691 0.7 0.742396
Target:  5'- aCGGCAAcgagUGCGGCGCCGaGAAUcgUGu -3'
miRNA:   3'- -GCUGUUa---GCGCUGCGGCgCUUAuaGC- -5'
24887 3' -51 NC_005284.1 + 12232 0.66 0.922681
Target:  5'- gCGGCAuUCaacauagcgaacaGCGGauaaGCCGCGAcgAUCGc -3'
miRNA:   3'- -GCUGUuAG-------------CGCUg---CGGCGCUuaUAGC- -5'
24887 3' -51 NC_005284.1 + 6778 0.66 0.929124
Target:  5'- aCGGuCAcgCGCGucACGcCCGCGAAUuccgcaauggcGUCGa -3'
miRNA:   3'- -GCU-GUuaGCGC--UGC-GGCGCUUA-----------UAGC- -5'
24887 3' -51 NC_005284.1 + 31089 0.7 0.78382
Target:  5'- uCGACAGgaaGCGuACGCgCGCGggUAcugCGa -3'
miRNA:   3'- -GCUGUUag-CGC-UGCG-GCGCuuAUa--GC- -5'
24887 3' -51 NC_005284.1 + 5213 0.66 0.915892
Target:  5'- uCGGCAAUCcggucaacgguaCGACGCCGCGccUGUgGa -3'
miRNA:   3'- -GCUGUUAGc-----------GCUGCGGCGCuuAUAgC- -5'
24887 3' -51 NC_005284.1 + 39690 0.67 0.910739
Target:  5'- uCGACAa--GCG-CGCCGCGAGgcagaCGg -3'
miRNA:   3'- -GCUGUuagCGCuGCGGCGCUUaua--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.