Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24887 | 3' | -51 | NC_005284.1 | + | 8372 | 0.71 | 0.720945 |
Target: 5'- gCGAUGAUCGCGGCGgCgGCGuuucaGUCGc -3' miRNA: 3'- -GCUGUUAGCGCUGC-GgCGCuua--UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 45113 | 0.76 | 0.439644 |
Target: 5'- uGACugcUGCGACGCUGCGAucGUCGa -3' miRNA: 3'- gCUGuuaGCGCUGCGGCGCUuaUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 36838 | 0.74 | 0.531897 |
Target: 5'- uGGCGAUCGCGACuugcuuuGCCGCGuccgccUCGg -3' miRNA: 3'- gCUGUUAGCGCUG-------CGGCGCuuau--AGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 12348 | 0.74 | 0.554736 |
Target: 5'- cCGGCuucgCGCGAuuCGCCGCGggUGggcUCGu -3' miRNA: 3'- -GCUGuua-GCGCU--GCGGCGCuuAU---AGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 12264 | 0.7 | 0.773679 |
Target: 5'- aCGGCGAguUCGUGguccGCGCCGCaguGGUGUCGc -3' miRNA: 3'- -GCUGUU--AGCGC----UGCGGCGc--UUAUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 44123 | 0.66 | 0.939957 |
Target: 5'- aCGACAa--GUG-CGCUGUGAcgAUCGa -3' miRNA: 3'- -GCUGUuagCGCuGCGGCGCUuaUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 29706 | 0.66 | 0.939957 |
Target: 5'- uGACGAUCGCGAggucgGCCgGCGuc-AUCa -3' miRNA: 3'- gCUGUUAGCGCUg----CGG-CGCuuaUAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 47750 | 0.67 | 0.889821 |
Target: 5'- aCGGCGGcgCGCGuACGuCCGCGuAAgcagAUCGa -3' miRNA: 3'- -GCUGUUa-GCGC-UGC-GGCGC-UUa---UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 19254 | 0.67 | 0.910739 |
Target: 5'- gGACGcGUCGCGGCGUCGUaucagAUCa -3' miRNA: 3'- gCUGU-UAGCGCUGCGGCGcuua-UAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 37434 | 0.67 | 0.910739 |
Target: 5'- gGACGuuAUCGCaGCcgGCCGCGAGgaacAUCGu -3' miRNA: 3'- gCUGU--UAGCGcUG--CGGCGCUUa---UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 39690 | 0.67 | 0.910739 |
Target: 5'- uCGACAa--GCG-CGCCGCGAGgcagaCGg -3' miRNA: 3'- -GCUGUuagCGCuGCGGCGCUUaua--GC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 5213 | 0.66 | 0.915892 |
Target: 5'- uCGGCAAUCcggucaacgguaCGACGCCGCGccUGUgGa -3' miRNA: 3'- -GCUGUUAGc-----------GCUGCGGCGCuuAUAgC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 10646 | 0.67 | 0.889821 |
Target: 5'- gCGGCGAagcgcugCGCGaggaacuggugcGCGCCGCGGGcgcgAUCGa -3' miRNA: 3'- -GCUGUUa------GCGC------------UGCGGCGCUUa---UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 10084 | 0.67 | 0.889821 |
Target: 5'- gCGGCGAcCGCGAcCGCgGCGG--GUCu -3' miRNA: 3'- -GCUGUUaGCGCU-GCGgCGCUuaUAGc -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 17945 | 0.67 | 0.881535 |
Target: 5'- cCGACAAUCgccgccgGCGACGCUucacgGCGAuucugccGUCGg -3' miRNA: 3'- -GCUGUUAG-------CGCUGCGG-----CGCUua-----UAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 37373 | 0.67 | 0.889821 |
Target: 5'- uCGACGu---UGACGCCGCGGucGUCGc -3' miRNA: 3'- -GCUGUuagcGCUGCGGCGCUuaUAGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 31089 | 0.7 | 0.78382 |
Target: 5'- uCGACAGgaaGCGuACGCgCGCGggUAcugCGa -3' miRNA: 3'- -GCUGUUag-CGC-UGCG-GCGCuuAUa--GC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 36354 | 0.66 | 0.934683 |
Target: 5'- --uCGAUCGCGcCgGCCGCGAcgAUGuUCGa -3' miRNA: 3'- gcuGUUAGCGCuG-CGGCGCU--UAU-AGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 47580 | 0.66 | 0.934683 |
Target: 5'- uGGCGGUgCGUGACGCUGuUGAGg--CGg -3' miRNA: 3'- gCUGUUA-GCGCUGCGGC-GCUUauaGC- -5' |
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24887 | 3' | -51 | NC_005284.1 | + | 18205 | 0.66 | 0.939957 |
Target: 5'- gCGGCGAUCGaCGACGgCGCa------- -3' miRNA: 3'- -GCUGUUAGC-GCUGCgGCGcuuauagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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