miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 3' -51 NC_005284.1 + 50117 0.75 0.500941
Target:  5'- gCGGCGAUCGCGcACGCgGCGu---UCGc -3'
miRNA:   3'- -GCUGUUAGCGC-UGCGgCGCuuauAGC- -5'
24887 3' -51 NC_005284.1 + 10084 0.67 0.889821
Target:  5'- gCGGCGAcCGCGAcCGCgGCGG--GUCu -3'
miRNA:   3'- -GCUGUUaGCGCU-GCGgCGCUuaUAGc -5'
24887 3' -51 NC_005284.1 + 10646 0.67 0.889821
Target:  5'- gCGGCGAagcgcugCGCGaggaacuggugcGCGCCGCGGGcgcgAUCGa -3'
miRNA:   3'- -GCUGUUa------GCGC------------UGCGGCGCUUa---UAGC- -5'
24887 3' -51 NC_005284.1 + 20820 0.66 0.934683
Target:  5'- gCGuCGGUCGCGuCGUCGCuuacguugaccGAUAUCGg -3'
miRNA:   3'- -GCuGUUAGCGCuGCGGCGc----------UUAUAGC- -5'
24887 3' -51 NC_005284.1 + 54639 0.66 0.929124
Target:  5'- aCGACGAgaaccugcaaGCGAucUGCCGUGAcUGUCa -3'
miRNA:   3'- -GCUGUUag--------CGCU--GCGGCGCUuAUAGc -5'
24887 3' -51 NC_005284.1 + 17006 0.66 0.929124
Target:  5'- gCGACGAUCGcCGACGCgaucaaCGuCGAGg--CGa -3'
miRNA:   3'- -GCUGUUAGC-GCUGCG------GC-GCUUauaGC- -5'
24887 3' -51 NC_005284.1 + 8095 0.66 0.929124
Target:  5'- aCGACGAUgcaacCGCGGuCGCgGCGGcguUCGg -3'
miRNA:   3'- -GCUGUUA-----GCGCU-GCGgCGCUuauAGC- -5'
24887 3' -51 NC_005284.1 + 6828 0.66 0.929124
Target:  5'- gGGCGAuUCGCaccgaguuGGCGCgCGCGAucgAUCGu -3'
miRNA:   3'- gCUGUU-AGCG--------CUGCG-GCGCUua-UAGC- -5'
24887 3' -51 NC_005284.1 + 12638 0.66 0.929124
Target:  5'- gCGGCGAUa-CGACGCUGCGuGUG-CGc -3'
miRNA:   3'- -GCUGUUAgcGCUGCGGCGCuUAUaGC- -5'
24887 3' -51 NC_005284.1 + 9015 0.66 0.929124
Target:  5'- aGGCGGUCGCGuuGUCGgGuGUcUCGg -3'
miRNA:   3'- gCUGUUAGCGCugCGGCgCuUAuAGC- -5'
24887 3' -51 NC_005284.1 + 31158 0.66 0.923281
Target:  5'- uGACGAUCGUcGCGCCGauccaGAcguUAUCc -3'
miRNA:   3'- gCUGUUAGCGcUGCGGCg----CUu--AUAGc -5'
24887 3' -51 NC_005284.1 + 41052 0.66 0.917152
Target:  5'- cCGACGuuucUCGCGggGCGCCGCGugccUCc -3'
miRNA:   3'- -GCUGUu---AGCGC--UGCGGCGCuuauAGc -5'
24887 3' -51 NC_005284.1 + 18097 0.66 0.917152
Target:  5'- -cGCGAgcUCGCGGCGCaGC-AGUAUCGc -3'
miRNA:   3'- gcUGUU--AGCGCUGCGgCGcUUAUAGC- -5'
24887 3' -51 NC_005284.1 + 5213 0.66 0.915892
Target:  5'- uCGGCAAUCcggucaacgguaCGACGCCGCGccUGUgGa -3'
miRNA:   3'- -GCUGUUAGc-----------GCUGCGGCGCuuAUAgC- -5'
24887 3' -51 NC_005284.1 + 39690 0.67 0.910739
Target:  5'- uCGACAa--GCG-CGCCGCGAGgcagaCGg -3'
miRNA:   3'- -GCUGUuagCGCuGCGGCGCUUaua--GC- -5'
24887 3' -51 NC_005284.1 + 37434 0.67 0.910739
Target:  5'- gGACGuuAUCGCaGCcgGCCGCGAGgaacAUCGu -3'
miRNA:   3'- gCUGU--UAGCGcUG--CGGCGCUUa---UAGC- -5'
24887 3' -51 NC_005284.1 + 19254 0.67 0.910739
Target:  5'- gGACGcGUCGCGGCGUCGUaucagAUCa -3'
miRNA:   3'- gCUGU-UAGCGCUGCGGCGcuua-UAGc -5'
24887 3' -51 NC_005284.1 + 47750 0.67 0.889821
Target:  5'- aCGGCGGcgCGCGuACGuCCGCGuAAgcagAUCGa -3'
miRNA:   3'- -GCUGUUa-GCGC-UGC-GGCGC-UUa---UAGC- -5'
24887 3' -51 NC_005284.1 + 41596 0.67 0.889821
Target:  5'- aCGuACGcgCGCGAgGCCGCgccGAGUG-CGa -3'
miRNA:   3'- -GC-UGUuaGCGCUgCGGCG---CUUAUaGC- -5'
24887 3' -51 NC_005284.1 + 37373 0.67 0.889821
Target:  5'- uCGACGu---UGACGCCGCGGucGUCGc -3'
miRNA:   3'- -GCUGUuagcGCUGCGGCGCUuaUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.