miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24887 5' -51.3 NC_005284.1 + 48336 0.66 0.896239
Target:  5'- gGCGGCgGCGagaugauucucGCGCUGGcACUUGcgGACc -3'
miRNA:   3'- gCGCUGaCGC-----------UGUGACU-UGAACa-CUG- -5'
24887 5' -51.3 NC_005284.1 + 54675 0.66 0.888849
Target:  5'- aCGCGGCgaaGaCGGCGCgcGAGCgguugcgGUGACg -3'
miRNA:   3'- -GCGCUGa--C-GCUGUGa-CUUGaa-----CACUG- -5'
24887 5' -51.3 NC_005284.1 + 13996 0.66 0.888849
Target:  5'- gCGCGGCUGCGcgguaaGCgGGGC--GUGACg -3'
miRNA:   3'- -GCGCUGACGCug----UGaCUUGaaCACUG- -5'
24887 5' -51.3 NC_005284.1 + 37064 0.67 0.865038
Target:  5'- uGCGcCUGCGACgugcaGCcGAACgccGUGACc -3'
miRNA:   3'- gCGCuGACGCUG-----UGaCUUGaa-CACUG- -5'
24887 5' -51.3 NC_005284.1 + 40770 0.67 0.847864
Target:  5'- gGcCGACUGUgucgaGGCaACUGcACUUGUGAUg -3'
miRNA:   3'- gC-GCUGACG-----CUG-UGACuUGAACACUG- -5'
24887 5' -51.3 NC_005284.1 + 50248 0.68 0.810711
Target:  5'- aCGCGAacgGCGACGCUGAagcgucagaagGCgaucGUGAa -3'
miRNA:   3'- -GCGCUga-CGCUGUGACU-----------UGaa--CACUg -5'
24887 5' -51.3 NC_005284.1 + 44892 0.69 0.75989
Target:  5'- aGCGACgcuucgGCG-CGCUGAGCUccugcUGUG-Cg -3'
miRNA:   3'- gCGCUGa-----CGCuGUGACUUGA-----ACACuG- -5'
24887 5' -51.3 NC_005284.1 + 14219 0.69 0.746045
Target:  5'- uGCGGCUGCGucgaagaaaacaagGCACUGAAgagGUGGg -3'
miRNA:   3'- gCGCUGACGC--------------UGUGACUUgaaCACUg -5'
24887 5' -51.3 NC_005284.1 + 4033 0.7 0.71666
Target:  5'- uCGaCGGCUGCGAUcaACUGGcGCUUaacgGUGGCg -3'
miRNA:   3'- -GC-GCUGACGCUG--UGACU-UGAA----CACUG- -5'
24887 5' -51.3 NC_005284.1 + 21777 0.7 0.683262
Target:  5'- aGCGGCUGCGcgucgcuguccgACACUGcACggcagccgGUGGCg -3'
miRNA:   3'- gCGCUGACGC------------UGUGACuUGaa------CACUG- -5'
24887 5' -51.3 NC_005284.1 + 23079 0.72 0.581495
Target:  5'- gGUGGCgGCGACGCUGGuaGCaUGUGGg -3'
miRNA:   3'- gCGCUGaCGCUGUGACU--UGaACACUg -5'
24887 5' -51.3 NC_005284.1 + 9385 1.1 0.002264
Target:  5'- cCGCGACUGCGACACUGAACUUGUGACc -3'
miRNA:   3'- -GCGCUGACGCUGUGACUUGAACACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.