miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24888 3' -49.7 NC_005284.1 + 33611 0.66 0.949097
Target:  5'- --cCGcGUGCUCGAUgagCCGu--UGCUCg -3'
miRNA:   3'- caaGC-UACGGGCUAa--GGCuuuACGAG- -5'
24888 3' -49.7 NC_005284.1 + 7617 0.66 0.944202
Target:  5'- gGUUCGgcGCCUGAUguacgcgCCGGucguacagcgGGUGCUUc -3'
miRNA:   3'- -CAAGCuaCGGGCUAa------GGCU----------UUACGAG- -5'
24888 3' -49.7 NC_005284.1 + 53439 0.66 0.939009
Target:  5'- -gUCGAUcGUCCaGAUccagCCGAAAaGCUCg -3'
miRNA:   3'- caAGCUA-CGGG-CUAa---GGCUUUaCGAG- -5'
24888 3' -49.7 NC_005284.1 + 39520 0.66 0.939009
Target:  5'- -gUCGGcUGUgCCGAUgcgCCGGGAUGCg- -3'
miRNA:   3'- caAGCU-ACG-GGCUAa--GGCUUUACGag -5'
24888 3' -49.7 NC_005284.1 + 5692 0.66 0.933516
Target:  5'- -cUCGcgcUGCUCGAUgCCGAGuUGCUUa -3'
miRNA:   3'- caAGCu--ACGGGCUAaGGCUUuACGAG- -5'
24888 3' -49.7 NC_005284.1 + 54632 0.67 0.92772
Target:  5'- -cUCGAUGUUCGugaccaagCCGAAGUcugGCUCg -3'
miRNA:   3'- caAGCUACGGGCuaa-----GGCUUUA---CGAG- -5'
24888 3' -49.7 NC_005284.1 + 38771 0.67 0.92772
Target:  5'- -cUCGucgcGCCCGA--CCG-GAUGCUCg -3'
miRNA:   3'- caAGCua--CGGGCUaaGGCuUUACGAG- -5'
24888 3' -49.7 NC_005284.1 + 8201 0.67 0.915221
Target:  5'- cGUUCGGcguUGCCCacugcgCCGccAUGCUCg -3'
miRNA:   3'- -CAAGCU---ACGGGcuaa--GGCuuUACGAG- -5'
24888 3' -49.7 NC_005284.1 + 45386 0.67 0.915221
Target:  5'- --aCGAUGCCg----UCGAGGUGCUCu -3'
miRNA:   3'- caaGCUACGGgcuaaGGCUUUACGAG- -5'
24888 3' -49.7 NC_005284.1 + 51315 0.7 0.782046
Target:  5'- -cUCGA-GCCCGAgcugUCCGAGGaacagcgcaaaugGCUCg -3'
miRNA:   3'- caAGCUaCGGGCUa---AGGCUUUa------------CGAG- -5'
24888 3' -49.7 NC_005284.1 + 54205 0.71 0.743606
Target:  5'- -aUCGAucuuUGCCCGAaucgucgCCGAAAUGUUg -3'
miRNA:   3'- caAGCU----ACGGGCUaa-----GGCUUUACGAg -5'
24888 3' -49.7 NC_005284.1 + 8950 1.11 0.002589
Target:  5'- gGUUCGAUGCCCGAUUCCGAAAUGCUCg -3'
miRNA:   3'- -CAAGCUACGGGCUAAGGCUUUACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.