miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24889 3' -50.5 NC_005284.1 + 37810 0.66 0.92538
Target:  5'- aAUCCGCCAcGCGcc-CGGAacGCCGGa -3'
miRNA:   3'- gUAGGCGGUaCGCuauGUCU--UGGUUg -5'
24889 3' -50.5 NC_005284.1 + 24673 0.66 0.919183
Target:  5'- --gUgGUCGUGCc-UACGGAGCCAACu -3'
miRNA:   3'- guaGgCGGUACGcuAUGUCUUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 54440 0.66 0.919183
Target:  5'- --aCUGCCuUGCGAgcugucgacgACAGGGCCGuuGCg -3'
miRNA:   3'- guaGGCGGuACGCUa---------UGUCUUGGU--UG- -5'
24889 3' -50.5 NC_005284.1 + 32849 0.66 0.905192
Target:  5'- aAUCuCGCCAUagggaaaguuccgGCGAUGCAGGcuuggGCuCGACu -3'
miRNA:   3'- gUAG-GCGGUA-------------CGCUAUGUCU-----UG-GUUG- -5'
24889 3' -50.5 NC_005284.1 + 5903 0.66 0.898796
Target:  5'- uUcgCCGCCggGCGuguccACGGcGCCGACu -3'
miRNA:   3'- -GuaGGCGGuaCGCua---UGUCuUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 15791 0.67 0.891413
Target:  5'- --cUCGCgCAUGCGuUGCGucGCCAGCg -3'
miRNA:   3'- guaGGCG-GUACGCuAUGUcuUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 19620 0.67 0.886845
Target:  5'- gGUgCGCC--GCGAUcgcacacggcauacaACGGAGCCGACc -3'
miRNA:   3'- gUAgGCGGuaCGCUA---------------UGUCUUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 31427 0.67 0.875791
Target:  5'- --cUCGUCGUGCG---UAGGGCCAACg -3'
miRNA:   3'- guaGGCGGUACGCuauGUCUUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 46345 0.67 0.875791
Target:  5'- -cUCCGCCGUcGCGGgcucGCcGGACCAu- -3'
miRNA:   3'- guAGGCGGUA-CGCUa---UGuCUUGGUug -5'
24889 3' -50.5 NC_005284.1 + 30273 0.67 0.867566
Target:  5'- uCGUUCGCUGUcgaguggcucgcGCGAUACGGuugaGGCCGGCu -3'
miRNA:   3'- -GUAGGCGGUA------------CGCUAUGUC----UUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 46236 0.67 0.859073
Target:  5'- --aCCGCgGgUGgGAUGCGGAAUgGACg -3'
miRNA:   3'- guaGGCGgU-ACgCUAUGUCUUGgUUG- -5'
24889 3' -50.5 NC_005284.1 + 29216 0.68 0.850323
Target:  5'- --aCCGCCGcGCGGacgGCGGGAUCGAa -3'
miRNA:   3'- guaGGCGGUaCGCUa--UGUCUUGGUUg -5'
24889 3' -50.5 NC_005284.1 + 44607 0.68 0.841324
Target:  5'- aCcgCCGCCA-GCaAgcCGGAACCAACc -3'
miRNA:   3'- -GuaGGCGGUaCGcUauGUCUUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 26180 0.68 0.841324
Target:  5'- gGUuuGCCAUugGUGAuUACGGuGCCGGCg -3'
miRNA:   3'- gUAggCGGUA--CGCU-AUGUCuUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 48440 0.68 0.822617
Target:  5'- --aUCGCCgcGUGCaGUGCAGuACCAGCu -3'
miRNA:   3'- guaGGCGG--UACGcUAUGUCuUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 41890 0.68 0.822617
Target:  5'- --aCCGCCGggacgGCGAUGauuGGAuuccGCCGACa -3'
miRNA:   3'- guaGGCGGUa----CGCUAUg--UCU----UGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 8300 0.68 0.81293
Target:  5'- gCGUCgGCCAUGCacgaGCAGcuaacGCCAGCg -3'
miRNA:   3'- -GUAGgCGGUACGcua-UGUCu----UGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 16062 0.69 0.79295
Target:  5'- cCGUCCggcGCCAUGCagcGCAuuGAGCCGGCa -3'
miRNA:   3'- -GUAGG---CGGUACGcuaUGU--CUUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 54480 0.69 0.782679
Target:  5'- --aUCGUCAUGCgcgagGAUACGGAACCGc- -3'
miRNA:   3'- guaGGCGGUACG-----CUAUGUCUUGGUug -5'
24889 3' -50.5 NC_005284.1 + 50758 0.69 0.782679
Target:  5'- aAUCCGCCGUGCGcgAU--GAUCGAUu -3'
miRNA:   3'- gUAGGCGGUACGCuaUGucUUGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.