miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24889 3' -50.5 NC_005284.1 + 8481 1.11 0.002034
Target:  5'- cCAUCCGCCAUGCGAUACAGAACCAACg -3'
miRNA:   3'- -GUAGGCGGUACGCUAUGUCUUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 31009 0.73 0.558432
Target:  5'- --gCCGCCGUGCG-UGCGGAaguuGCCGGu -3'
miRNA:   3'- guaGGCGGUACGCuAUGUCU----UGGUUg -5'
24889 3' -50.5 NC_005284.1 + 1669 0.73 0.569734
Target:  5'- -uUUCGCCGUGCGAgGCGuGAugUAGCg -3'
miRNA:   3'- guAGGCGGUACGCUaUGU-CUugGUUG- -5'
24889 3' -50.5 NC_005284.1 + 62 0.73 0.569734
Target:  5'- gCAUCCGCCggGCGGgcaacgACGGAcggGCCAc- -3'
miRNA:   3'- -GUAGGCGGuaCGCUa-----UGUCU---UGGUug -5'
24889 3' -50.5 NC_005284.1 + 33293 0.72 0.638365
Target:  5'- --gCCGCCAUGCcaaGCAGcgcGGCCAACa -3'
miRNA:   3'- guaGGCGGUACGcuaUGUC---UUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 40369 0.72 0.638365
Target:  5'- gAUCCGCCGgaGCGGUGCAGcGAgCAAg -3'
miRNA:   3'- gUAGGCGGUa-CGCUAUGUC-UUgGUUg -5'
24889 3' -50.5 NC_005284.1 + 25577 0.71 0.684133
Target:  5'- --cCCGCCGUccGCGcgGCGGuuGCCGACu -3'
miRNA:   3'- guaGGCGGUA--CGCuaUGUCu-UGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 928 0.7 0.72903
Target:  5'- --gCCGCUGUGCucGAUGCuGAACUGGCg -3'
miRNA:   3'- guaGGCGGUACG--CUAUGuCUUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 18254 0.69 0.76164
Target:  5'- -uUCCGCCAU-CGGUGCAGccGCCGc- -3'
miRNA:   3'- guAGGCGGUAcGCUAUGUCu-UGGUug -5'
24889 3' -50.5 NC_005284.1 + 19387 0.69 0.772239
Target:  5'- gAUUCGCCGUgaucgacgaggGCGGUGCAGGcgugAUCGGCg -3'
miRNA:   3'- gUAGGCGGUA-----------CGCUAUGUCU----UGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 54480 0.69 0.782679
Target:  5'- --aUCGUCAUGCgcgagGAUACGGAACCGc- -3'
miRNA:   3'- guaGGCGGUACG-----CUAUGUCUUGGUug -5'
24889 3' -50.5 NC_005284.1 + 50758 0.69 0.782679
Target:  5'- aAUCCGCCGUGCGcgAU--GAUCGAUu -3'
miRNA:   3'- gUAGGCGGUACGCuaUGucUUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 16062 0.69 0.79295
Target:  5'- cCGUCCggcGCCAUGCagcGCAuuGAGCCGGCa -3'
miRNA:   3'- -GUAGG---CGGUACGcuaUGU--CUUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 8300 0.68 0.81293
Target:  5'- gCGUCgGCCAUGCacgaGCAGcuaacGCCAGCg -3'
miRNA:   3'- -GUAGgCGGUACGcua-UGUCu----UGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 48440 0.68 0.822617
Target:  5'- --aUCGCCgcGUGCaGUGCAGuACCAGCu -3'
miRNA:   3'- guaGGCGG--UACGcUAUGUCuUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 41890 0.68 0.822617
Target:  5'- --aCCGCCGggacgGCGAUGauuGGAuuccGCCGACa -3'
miRNA:   3'- guaGGCGGUa----CGCUAUg--UCU----UGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 26180 0.68 0.841324
Target:  5'- gGUuuGCCAUugGUGAuUACGGuGCCGGCg -3'
miRNA:   3'- gUAggCGGUA--CGCU-AUGUCuUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 44607 0.68 0.841324
Target:  5'- aCcgCCGCCA-GCaAgcCGGAACCAACc -3'
miRNA:   3'- -GuaGGCGGUaCGcUauGUCUUGGUUG- -5'
24889 3' -50.5 NC_005284.1 + 29216 0.68 0.850323
Target:  5'- --aCCGCCGcGCGGacgGCGGGAUCGAa -3'
miRNA:   3'- guaGGCGGUaCGCUa--UGUCUUGGUUg -5'
24889 3' -50.5 NC_005284.1 + 46236 0.67 0.859073
Target:  5'- --aCCGCgGgUGgGAUGCGGAAUgGACg -3'
miRNA:   3'- guaGGCGgU-ACgCUAUGUCUUGgUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.