Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24889 | 3' | -50.5 | NC_005284.1 | + | 62 | 0.73 | 0.569734 |
Target: 5'- gCAUCCGCCggGCGGgcaacgACGGAcggGCCAc- -3' miRNA: 3'- -GUAGGCGGuaCGCUa-----UGUCU---UGGUug -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 928 | 0.7 | 0.72903 |
Target: 5'- --gCCGCUGUGCucGAUGCuGAACUGGCg -3' miRNA: 3'- guaGGCGGUACG--CUAUGuCUUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 1669 | 0.73 | 0.569734 |
Target: 5'- -uUUCGCCGUGCGAgGCGuGAugUAGCg -3' miRNA: 3'- guAGGCGGUACGCUaUGU-CUugGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 5903 | 0.66 | 0.898796 |
Target: 5'- uUcgCCGCCggGCGuguccACGGcGCCGACu -3' miRNA: 3'- -GuaGGCGGuaCGCua---UGUCuUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 8300 | 0.68 | 0.81293 |
Target: 5'- gCGUCgGCCAUGCacgaGCAGcuaacGCCAGCg -3' miRNA: 3'- -GUAGgCGGUACGcua-UGUCu----UGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 8481 | 1.11 | 0.002034 |
Target: 5'- cCAUCCGCCAUGCGAUACAGAACCAACg -3' miRNA: 3'- -GUAGGCGGUACGCUAUGUCUUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 15791 | 0.67 | 0.891413 |
Target: 5'- --cUCGCgCAUGCGuUGCGucGCCAGCg -3' miRNA: 3'- guaGGCG-GUACGCuAUGUcuUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 16062 | 0.69 | 0.79295 |
Target: 5'- cCGUCCggcGCCAUGCagcGCAuuGAGCCGGCa -3' miRNA: 3'- -GUAGG---CGGUACGcuaUGU--CUUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 18254 | 0.69 | 0.76164 |
Target: 5'- -uUCCGCCAU-CGGUGCAGccGCCGc- -3' miRNA: 3'- guAGGCGGUAcGCUAUGUCu-UGGUug -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 19387 | 0.69 | 0.772239 |
Target: 5'- gAUUCGCCGUgaucgacgaggGCGGUGCAGGcgugAUCGGCg -3' miRNA: 3'- gUAGGCGGUA-----------CGCUAUGUCU----UGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 19620 | 0.67 | 0.886845 |
Target: 5'- gGUgCGCC--GCGAUcgcacacggcauacaACGGAGCCGACc -3' miRNA: 3'- gUAgGCGGuaCGCUA---------------UGUCUUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 24673 | 0.66 | 0.919183 |
Target: 5'- --gUgGUCGUGCc-UACGGAGCCAACu -3' miRNA: 3'- guaGgCGGUACGcuAUGUCUUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 25577 | 0.71 | 0.684133 |
Target: 5'- --cCCGCCGUccGCGcgGCGGuuGCCGACu -3' miRNA: 3'- guaGGCGGUA--CGCuaUGUCu-UGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 26180 | 0.68 | 0.841324 |
Target: 5'- gGUuuGCCAUugGUGAuUACGGuGCCGGCg -3' miRNA: 3'- gUAggCGGUA--CGCU-AUGUCuUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 29216 | 0.68 | 0.850323 |
Target: 5'- --aCCGCCGcGCGGacgGCGGGAUCGAa -3' miRNA: 3'- guaGGCGGUaCGCUa--UGUCUUGGUUg -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 30273 | 0.67 | 0.867566 |
Target: 5'- uCGUUCGCUGUcgaguggcucgcGCGAUACGGuugaGGCCGGCu -3' miRNA: 3'- -GUAGGCGGUA------------CGCUAUGUC----UUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 31009 | 0.73 | 0.558432 |
Target: 5'- --gCCGCCGUGCG-UGCGGAaguuGCCGGu -3' miRNA: 3'- guaGGCGGUACGCuAUGUCU----UGGUUg -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 31427 | 0.67 | 0.875791 |
Target: 5'- --cUCGUCGUGCG---UAGGGCCAACg -3' miRNA: 3'- guaGGCGGUACGCuauGUCUUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 32849 | 0.66 | 0.905192 |
Target: 5'- aAUCuCGCCAUagggaaaguuccgGCGAUGCAGGcuuggGCuCGACu -3' miRNA: 3'- gUAG-GCGGUA-------------CGCUAUGUCU-----UG-GUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 33293 | 0.72 | 0.638365 |
Target: 5'- --gCCGCCAUGCcaaGCAGcgcGGCCAACa -3' miRNA: 3'- guaGGCGGUACGcuaUGUC---UUGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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