Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24889 | 3' | -50.5 | NC_005284.1 | + | 37810 | 0.66 | 0.92538 |
|
Target: 5'- aAUCCGCCAcGCGcc-CGGAacGCCGGa -3' miRNA: 3'- gUAGGCGGUaCGCuauGUCU--UGGUUg -5' |
|||||||
| 24889 | 3' | -50.5 | NC_005284.1 | + | 40369 | 0.72 | 0.638365 |
|
Target: 5'- gAUCCGCCGgaGCGGUGCAGcGAgCAAg -3' miRNA: 3'- gUAGGCGGUa-CGCUAUGUC-UUgGUUg -5' |
|||||||
| 24889 | 3' | -50.5 | NC_005284.1 | + | 41890 | 0.68 | 0.822617 |
|
Target: 5'- --aCCGCCGggacgGCGAUGauuGGAuuccGCCGACa -3' miRNA: 3'- guaGGCGGUa----CGCUAUg--UCU----UGGUUG- -5' |
|||||||
| 24889 | 3' | -50.5 | NC_005284.1 | + | 44607 | 0.68 | 0.841324 |
|
Target: 5'- aCcgCCGCCA-GCaAgcCGGAACCAACc -3' miRNA: 3'- -GuaGGCGGUaCGcUauGUCUUGGUUG- -5' |
|||||||
| 24889 | 3' | -50.5 | NC_005284.1 | + | 46236 | 0.67 | 0.859073 |
|
Target: 5'- --aCCGCgGgUGgGAUGCGGAAUgGACg -3' miRNA: 3'- guaGGCGgU-ACgCUAUGUCUUGgUUG- -5' |
|||||||
| 24889 | 3' | -50.5 | NC_005284.1 | + | 46345 | 0.67 | 0.875791 |
|
Target: 5'- -cUCCGCCGUcGCGGgcucGCcGGACCAu- -3' miRNA: 3'- guAGGCGGUA-CGCUa---UGuCUUGGUug -5' |
|||||||
| 24889 | 3' | -50.5 | NC_005284.1 | + | 48440 | 0.68 | 0.822617 |
|
Target: 5'- --aUCGCCgcGUGCaGUGCAGuACCAGCu -3' miRNA: 3'- guaGGCGG--UACGcUAUGUCuUGGUUG- -5' |
|||||||
| 24889 | 3' | -50.5 | NC_005284.1 | + | 50758 | 0.69 | 0.782679 |
|
Target: 5'- aAUCCGCCGUGCGcgAU--GAUCGAUu -3' miRNA: 3'- gUAGGCGGUACGCuaUGucUUGGUUG- -5' |
|||||||
| 24889 | 3' | -50.5 | NC_005284.1 | + | 54440 | 0.66 | 0.919183 |
|
Target: 5'- --aCUGCCuUGCGAgcugucgacgACAGGGCCGuuGCg -3' miRNA: 3'- guaGGCGGuACGCUa---------UGUCUUGGU--UG- -5' |
|||||||
| 24889 | 3' | -50.5 | NC_005284.1 | + | 54480 | 0.69 | 0.782679 |
|
Target: 5'- --aUCGUCAUGCgcgagGAUACGGAACCGc- -3' miRNA: 3'- guaGGCGGUACG-----CUAUGUCUUGGUug -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home