Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24889 | 3' | -50.5 | NC_005284.1 | + | 8300 | 0.68 | 0.81293 |
Target: 5'- gCGUCgGCCAUGCacgaGCAGcuaacGCCAGCg -3' miRNA: 3'- -GUAGgCGGUACGcua-UGUCu----UGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 44607 | 0.68 | 0.841324 |
Target: 5'- aCcgCCGCCA-GCaAgcCGGAACCAACc -3' miRNA: 3'- -GuaGGCGGUaCGcUauGUCUUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 29216 | 0.68 | 0.850323 |
Target: 5'- --aCCGCCGcGCGGacgGCGGGAUCGAa -3' miRNA: 3'- guaGGCGGUaCGCUa--UGUCUUGGUUg -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 46345 | 0.67 | 0.875791 |
Target: 5'- -cUCCGCCGUcGCGGgcucGCcGGACCAu- -3' miRNA: 3'- guAGGCGGUA-CGCUa---UGuCUUGGUug -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 31427 | 0.67 | 0.875791 |
Target: 5'- --cUCGUCGUGCG---UAGGGCCAACg -3' miRNA: 3'- guaGGCGGUACGCuauGUCUUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 19620 | 0.67 | 0.886845 |
Target: 5'- gGUgCGCC--GCGAUcgcacacggcauacaACGGAGCCGACc -3' miRNA: 3'- gUAgGCGGuaCGCUA---------------UGUCUUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 15791 | 0.67 | 0.891413 |
Target: 5'- --cUCGCgCAUGCGuUGCGucGCCAGCg -3' miRNA: 3'- guaGGCG-GUACGCuAUGUcuUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 5903 | 0.66 | 0.898796 |
Target: 5'- uUcgCCGCCggGCGuguccACGGcGCCGACu -3' miRNA: 3'- -GuaGGCGGuaCGCua---UGUCuUGGUUG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 54440 | 0.66 | 0.919183 |
Target: 5'- --aCUGCCuUGCGAgcugucgacgACAGGGCCGuuGCg -3' miRNA: 3'- guaGGCGGuACGCUa---------UGUCUUGGU--UG- -5' |
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24889 | 3' | -50.5 | NC_005284.1 | + | 8481 | 1.11 | 0.002034 |
Target: 5'- cCAUCCGCCAUGCGAUACAGAACCAACg -3' miRNA: 3'- -GUAGGCGGUACGCUAUGUCUUGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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