miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24890 3' -52.8 NC_005284.1 + 51494 0.66 0.856469
Target:  5'- gCGCuUugGUCaaaugggggacaCGCgGGACGCUGAugGCg -3'
miRNA:   3'- -GUG-AugCAG------------GCG-UCUGUGACUugCGg -5'
24890 3' -52.8 NC_005284.1 + 43176 0.66 0.856469
Target:  5'- gCGCUgcACGUCaCGCuGACGCUcGGcCGCg -3'
miRNA:   3'- -GUGA--UGCAG-GCGuCUGUGA-CUuGCGg -5'
24890 3' -52.8 NC_005284.1 + 37993 0.66 0.847914
Target:  5'- aUAUUGcCGUUCGacguguccuGACGCUGuAGCGCCg -3'
miRNA:   3'- -GUGAU-GCAGGCgu-------CUGUGAC-UUGCGG- -5'
24890 3' -52.8 NC_005284.1 + 42105 0.66 0.847914
Target:  5'- ----cCGUCCGCGGccCGCUGggUguaGCCg -3'
miRNA:   3'- gugauGCAGGCGUCu-GUGACuuG---CGG- -5'
24890 3' -52.8 NC_005284.1 + 35546 0.66 0.839126
Target:  5'- cCGCgacGCGUCCGUucAGAUcgGCguagGAcuGCGCCa -3'
miRNA:   3'- -GUGa--UGCAGGCG--UCUG--UGa---CU--UGCGG- -5'
24890 3' -52.8 NC_005284.1 + 19494 0.66 0.830116
Target:  5'- cCACgaacGCGUCgacUGUAG-CGCaUGGACGCCg -3'
miRNA:   3'- -GUGa---UGCAG---GCGUCuGUG-ACUUGCGG- -5'
24890 3' -52.8 NC_005284.1 + 42882 0.66 0.830116
Target:  5'- gCGCUGCGUUcugCGCGGAUucCUGAuagaccgcauCGCCc -3'
miRNA:   3'- -GUGAUGCAG---GCGUCUGu-GACUu---------GCGG- -5'
24890 3' -52.8 NC_005284.1 + 52380 0.67 0.820892
Target:  5'- aCAC-ACGaccacaCCGCAGAUAgCUGAAgUGCCg -3'
miRNA:   3'- -GUGaUGCa-----GGCGUCUGU-GACUU-GCGG- -5'
24890 3' -52.8 NC_005284.1 + 42777 0.67 0.820892
Target:  5'- uGCUGucaaucaGUCCGCGGAaAUUGAgcuugcccgACGCCg -3'
miRNA:   3'- gUGAUg------CAGGCGUCUgUGACU---------UGCGG- -5'
24890 3' -52.8 NC_005284.1 + 42214 0.67 0.820892
Target:  5'- -uUUAUaUCCGCAGuAgGCUGAACGaCCc -3'
miRNA:   3'- guGAUGcAGGCGUC-UgUGACUUGC-GG- -5'
24890 3' -52.8 NC_005284.1 + 16688 0.67 0.801845
Target:  5'- gGCcgGCGUCgGCGuGcCGCUGAcguccgacGCGCCg -3'
miRNA:   3'- gUGa-UGCAGgCGU-CuGUGACU--------UGCGG- -5'
24890 3' -52.8 NC_005284.1 + 21303 0.67 0.792043
Target:  5'- cCGCUAUGUCgGCAG-CA----GCGCCg -3'
miRNA:   3'- -GUGAUGCAGgCGUCuGUgacuUGCGG- -5'
24890 3' -52.8 NC_005284.1 + 38845 0.67 0.782071
Target:  5'- gGCcgGCGUCgCGCGccGACGuCagGAACGCCg -3'
miRNA:   3'- gUGa-UGCAG-GCGU--CUGU-Ga-CUUGCGG- -5'
24890 3' -52.8 NC_005284.1 + 42519 0.68 0.751243
Target:  5'- cCACUGCGg-CGCGGAcCAC-GAAcuCGCCg -3'
miRNA:   3'- -GUGAUGCagGCGUCU-GUGaCUU--GCGG- -5'
24890 3' -52.8 NC_005284.1 + 37374 0.68 0.751243
Target:  5'- --aUGCGUCCGCGcGCGuCUGAagcACGCa -3'
miRNA:   3'- gugAUGCAGGCGUcUGU-GACU---UGCGg -5'
24890 3' -52.8 NC_005284.1 + 23205 0.68 0.740703
Target:  5'- aGCUGCGUCgaCGaCGGGCGgUGGA-GCCg -3'
miRNA:   3'- gUGAUGCAG--GC-GUCUGUgACUUgCGG- -5'
24890 3' -52.8 NC_005284.1 + 33890 0.68 0.730051
Target:  5'- aACUcgGUCCGCAGACACau--CGUCa -3'
miRNA:   3'- gUGAugCAGGCGUCUGUGacuuGCGG- -5'
24890 3' -52.8 NC_005284.1 + 13436 0.68 0.730051
Target:  5'- ---gGCGaUCCGCAGGCcagaugacCUGAuacGCGCCg -3'
miRNA:   3'- gugaUGC-AGGCGUCUGu-------GACU---UGCGG- -5'
24890 3' -52.8 NC_005284.1 + 21133 0.68 0.719298
Target:  5'- gACUugGUacgaCCGCuGGCagGCUGAAUGCa -3'
miRNA:   3'- gUGAugCA----GGCGuCUG--UGACUUGCGg -5'
24890 3' -52.8 NC_005284.1 + 44316 0.69 0.708458
Target:  5'- uCGCcaaACGUCgGCAccauGACACUuuGCGCCg -3'
miRNA:   3'- -GUGa--UGCAGgCGU----CUGUGAcuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.