miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24890 5' -57 NC_005284.1 + 44894 0.66 0.664085
Target:  5'- -cGACGcUUCGGCGcgcugaGCUCcuGCUGUGCg -3'
miRNA:   3'- ccCUGC-AAGCCGCaa----CGGG--UGACGCG- -5'
24890 5' -57 NC_005284.1 + 6881 0.66 0.653332
Target:  5'- uGGcCG-UCGGCGggaacUGCUCGCgcauaGCGCg -3'
miRNA:   3'- cCCuGCaAGCCGCa----ACGGGUGa----CGCG- -5'
24890 5' -57 NC_005284.1 + 47072 0.66 0.653332
Target:  5'- cGGcGGCGgcacgagcUUCGGCGcaccGCUCAC-GCGCa -3'
miRNA:   3'- -CC-CUGC--------AAGCCGCaa--CGGGUGaCGCG- -5'
24890 5' -57 NC_005284.1 + 26917 0.66 0.653332
Target:  5'- cGGGACugauUUCGGCGaUGCgCCggGCggGCGUc -3'
miRNA:   3'- -CCCUGc---AAGCCGCaACG-GG--UGa-CGCG- -5'
24890 5' -57 NC_005284.1 + 21900 0.67 0.610227
Target:  5'- cGGaacGCGUuuUCGGCGUcGCCgGCgacgaucaGCGCg -3'
miRNA:   3'- cCC---UGCA--AGCCGCAaCGGgUGa-------CGCG- -5'
24890 5' -57 NC_005284.1 + 21814 0.67 0.588747
Target:  5'- cGGugGcgaCGGCG-UGCCCg--GCGCu -3'
miRNA:   3'- cCCugCaa-GCCGCaACGGGugaCGCG- -5'
24890 5' -57 NC_005284.1 + 33996 0.67 0.588747
Target:  5'- aGGGgGUgCGGCGaggGCCgAuuCUGCGCg -3'
miRNA:   3'- cCCUgCAaGCCGCaa-CGGgU--GACGCG- -5'
24890 5' -57 NC_005284.1 + 27542 0.67 0.578055
Target:  5'- cGGG-GUUCGGCuaUUGgCCGCgUGCGCu -3'
miRNA:   3'- cCCUgCAAGCCGc-AACgGGUG-ACGCG- -5'
24890 5' -57 NC_005284.1 + 17072 0.67 0.578055
Target:  5'- cGGcCuUUCGGCGgggcgGCCCguaUGCGCg -3'
miRNA:   3'- cCCuGcAAGCCGCaa---CGGGug-ACGCG- -5'
24890 5' -57 NC_005284.1 + 26129 0.68 0.546268
Target:  5'- uGGACaccgUCGGCGgUGUUCGC-GCGCu -3'
miRNA:   3'- cCCUGca--AGCCGCaACGGGUGaCGCG- -5'
24890 5' -57 NC_005284.1 + 27805 0.68 0.51506
Target:  5'- cGGACGagUGGCG-UGCCCGCgaagaGCu -3'
miRNA:   3'- cCCUGCaaGCCGCaACGGGUGacg--CG- -5'
24890 5' -57 NC_005284.1 + 50330 0.68 0.51506
Target:  5'- uGGcGGCGUgccgCGGCGaaccgUGCUUuCUGCGUg -3'
miRNA:   3'- -CC-CUGCAa---GCCGCa----ACGGGuGACGCG- -5'
24890 5' -57 NC_005284.1 + 44953 0.68 0.504816
Target:  5'- --cGCGUagGGCG-UGCCCGugaUGCGCg -3'
miRNA:   3'- cccUGCAagCCGCaACGGGUg--ACGCG- -5'
24890 5' -57 NC_005284.1 + 6046 0.69 0.484599
Target:  5'- aGGACGUugucUCGGgGgcGUCCGCgaGCGUc -3'
miRNA:   3'- cCCUGCA----AGCCgCaaCGGGUGa-CGCG- -5'
24890 5' -57 NC_005284.1 + 35275 0.69 0.484599
Target:  5'- cGGGugGUgUCGGCGU--CCa--UGCGCu -3'
miRNA:   3'- -CCCugCA-AGCCGCAacGGgugACGCG- -5'
24890 5' -57 NC_005284.1 + 40273 0.69 0.455026
Target:  5'- --aGCG-UCGGCGaUGgCUGCUGCGCg -3'
miRNA:   3'- cccUGCaAGCCGCaACgGGUGACGCG- -5'
24890 5' -57 NC_005284.1 + 54704 0.69 0.455026
Target:  5'- cGGuGACGUgguggUGGCccguccgucGUUGCCCGCccggcggaUGCGCc -3'
miRNA:   3'- -CC-CUGCAa----GCCG---------CAACGGGUG--------ACGCG- -5'
24890 5' -57 NC_005284.1 + 47505 0.69 0.452122
Target:  5'- aGGAugcuaucgccgucgUGUUCGGCGUcgaggUGCCgACcgUGCGCu -3'
miRNA:   3'- cCCU--------------GCAAGCCGCA-----ACGGgUG--ACGCG- -5'
24890 5' -57 NC_005284.1 + 38705 0.7 0.39898
Target:  5'- uGGACGUaUCGGC--UGCCgGCucaaUGCGCu -3'
miRNA:   3'- cCCUGCA-AGCCGcaACGGgUG----ACGCG- -5'
24890 5' -57 NC_005284.1 + 16508 0.7 0.390076
Target:  5'- -cGACGUgaucUCGGCGggGCCCAUcgugGgGCu -3'
miRNA:   3'- ccCUGCA----AGCCGCaaCGGGUGa---CgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.