Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24890 | 5' | -57 | NC_005284.1 | + | 44894 | 0.66 | 0.664085 |
Target: 5'- -cGACGcUUCGGCGcgcugaGCUCcuGCUGUGCg -3' miRNA: 3'- ccCUGC-AAGCCGCaa----CGGG--UGACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 6881 | 0.66 | 0.653332 |
Target: 5'- uGGcCG-UCGGCGggaacUGCUCGCgcauaGCGCg -3' miRNA: 3'- cCCuGCaAGCCGCa----ACGGGUGa----CGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 47072 | 0.66 | 0.653332 |
Target: 5'- cGGcGGCGgcacgagcUUCGGCGcaccGCUCAC-GCGCa -3' miRNA: 3'- -CC-CUGC--------AAGCCGCaa--CGGGUGaCGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 26917 | 0.66 | 0.653332 |
Target: 5'- cGGGACugauUUCGGCGaUGCgCCggGCggGCGUc -3' miRNA: 3'- -CCCUGc---AAGCCGCaACG-GG--UGa-CGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 21900 | 0.67 | 0.610227 |
Target: 5'- cGGaacGCGUuuUCGGCGUcGCCgGCgacgaucaGCGCg -3' miRNA: 3'- cCC---UGCA--AGCCGCAaCGGgUGa-------CGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 21814 | 0.67 | 0.588747 |
Target: 5'- cGGugGcgaCGGCG-UGCCCg--GCGCu -3' miRNA: 3'- cCCugCaa-GCCGCaACGGGugaCGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 33996 | 0.67 | 0.588747 |
Target: 5'- aGGGgGUgCGGCGaggGCCgAuuCUGCGCg -3' miRNA: 3'- cCCUgCAaGCCGCaa-CGGgU--GACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 27542 | 0.67 | 0.578055 |
Target: 5'- cGGG-GUUCGGCuaUUGgCCGCgUGCGCu -3' miRNA: 3'- cCCUgCAAGCCGc-AACgGGUG-ACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 17072 | 0.67 | 0.578055 |
Target: 5'- cGGcCuUUCGGCGgggcgGCCCguaUGCGCg -3' miRNA: 3'- cCCuGcAAGCCGCaa---CGGGug-ACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 26129 | 0.68 | 0.546268 |
Target: 5'- uGGACaccgUCGGCGgUGUUCGC-GCGCu -3' miRNA: 3'- cCCUGca--AGCCGCaACGGGUGaCGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 27805 | 0.68 | 0.51506 |
Target: 5'- cGGACGagUGGCG-UGCCCGCgaagaGCu -3' miRNA: 3'- cCCUGCaaGCCGCaACGGGUGacg--CG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 50330 | 0.68 | 0.51506 |
Target: 5'- uGGcGGCGUgccgCGGCGaaccgUGCUUuCUGCGUg -3' miRNA: 3'- -CC-CUGCAa---GCCGCa----ACGGGuGACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 44953 | 0.68 | 0.504816 |
Target: 5'- --cGCGUagGGCG-UGCCCGugaUGCGCg -3' miRNA: 3'- cccUGCAagCCGCaACGGGUg--ACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 6046 | 0.69 | 0.484599 |
Target: 5'- aGGACGUugucUCGGgGgcGUCCGCgaGCGUc -3' miRNA: 3'- cCCUGCA----AGCCgCaaCGGGUGa-CGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 35275 | 0.69 | 0.484599 |
Target: 5'- cGGGugGUgUCGGCGU--CCa--UGCGCu -3' miRNA: 3'- -CCCugCA-AGCCGCAacGGgugACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 40273 | 0.69 | 0.455026 |
Target: 5'- --aGCG-UCGGCGaUGgCUGCUGCGCg -3' miRNA: 3'- cccUGCaAGCCGCaACgGGUGACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 54704 | 0.69 | 0.455026 |
Target: 5'- cGGuGACGUgguggUGGCccguccgucGUUGCCCGCccggcggaUGCGCc -3' miRNA: 3'- -CC-CUGCAa----GCCG---------CAACGGGUG--------ACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 47505 | 0.69 | 0.452122 |
Target: 5'- aGGAugcuaucgccgucgUGUUCGGCGUcgaggUGCCgACcgUGCGCu -3' miRNA: 3'- cCCU--------------GCAAGCCGCA-----ACGGgUG--ACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 38705 | 0.7 | 0.39898 |
Target: 5'- uGGACGUaUCGGC--UGCCgGCucaaUGCGCu -3' miRNA: 3'- cCCUGCA-AGCCGcaACGGgUG----ACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 16508 | 0.7 | 0.390076 |
Target: 5'- -cGACGUgaucUCGGCGggGCCCAUcgugGgGCu -3' miRNA: 3'- ccCUGCA----AGCCGCaaCGGGUGa---CgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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