Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 5389 | 0.7 | 0.390076 |
|
Target: 5'- cGGA-GUUCGGCugcUUGCCCguGCgGCGCg -3' miRNA: 3'- cCCUgCAAGCCGc--AACGGG--UGaCGCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 16508 | 0.7 | 0.390076 |
|
Target: 5'- -cGACGUgaucUCGGCGggGCCCAUcgugGgGCu -3' miRNA: 3'- ccCUGCA----AGCCGCaaCGGGUGa---CgCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 10769 | 0.71 | 0.355786 |
|
Target: 5'- aGGGCGUUCGGC--UGCUUuCUGaCGCg -3' miRNA: 3'- cCCUGCAAGCCGcaACGGGuGAC-GCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 18906 | 0.71 | 0.347552 |
|
Target: 5'- cGGGAag-UCGGCGcUUGgCacggaGCUGCGCg -3' miRNA: 3'- -CCCUgcaAGCCGC-AACgGg----UGACGCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 815 | 0.72 | 0.323673 |
|
Target: 5'- uGGcGACGUUCGGCug-GCUCAacaaGCGCa -3' miRNA: 3'- -CC-CUGCAAGCCGcaaCGGGUga--CGCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 53886 | 0.74 | 0.24608 |
|
Target: 5'- cGGGAUGggCGGcCGUcgucgcuUGCCUuggcCUGCGCg -3' miRNA: 3'- -CCCUGCaaGCC-GCA-------ACGGGu---GACGCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 8196 | 1.13 | 0.000411 |
|
Target: 5'- cGGGACGUUCGGCGUUGCCCACUGCGCc -3' miRNA: 3'- -CCCUGCAAGCCGCAACGGGUGACGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home