Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24890 | 5' | -57 | NC_005284.1 | + | 10769 | 0.71 | 0.355786 |
Target: 5'- aGGGCGUUCGGC--UGCUUuCUGaCGCg -3' miRNA: 3'- cCCUGCAAGCCGcaACGGGuGAC-GCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 10634 | 0.7 | 0.390076 |
Target: 5'- cGGcGACGagCGGCGgcGaagCGCUGCGCg -3' miRNA: 3'- -CC-CUGCaaGCCGCaaCgg-GUGACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 8196 | 1.13 | 0.000411 |
Target: 5'- cGGGACGUUCGGCGUUGCCCACUGCGCc -3' miRNA: 3'- -CCCUGCAAGCCGCAACGGGUGACGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 6881 | 0.66 | 0.653332 |
Target: 5'- uGGcCG-UCGGCGggaacUGCUCGCgcauaGCGCg -3' miRNA: 3'- cCCuGCaAGCCGCa----ACGGGUGa----CGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 6046 | 0.69 | 0.484599 |
Target: 5'- aGGACGUugucUCGGgGgcGUCCGCgaGCGUc -3' miRNA: 3'- cCCUGCA----AGCCgCaaCGGGUGa-CGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 5389 | 0.7 | 0.390076 |
Target: 5'- cGGA-GUUCGGCugcUUGCCCguGCgGCGCg -3' miRNA: 3'- cCCUgCAAGCCGc--AACGGG--UGaCGCG- -5' |
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24890 | 5' | -57 | NC_005284.1 | + | 815 | 0.72 | 0.323673 |
Target: 5'- uGGcGACGUUCGGCug-GCUCAacaaGCGCa -3' miRNA: 3'- -CC-CUGCAAGCCGcaaCGGGUga--CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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