Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 44953 | 0.68 | 0.504816 |
|
Target: 5'- --cGCGUagGGCG-UGCCCGugaUGCGCg -3' miRNA: 3'- cccUGCAagCCGCaACGGGUg--ACGCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 27805 | 0.68 | 0.51506 |
|
Target: 5'- cGGACGagUGGCG-UGCCCGCgaagaGCu -3' miRNA: 3'- cCCUGCaaGCCGCaACGGGUGacg--CG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 17072 | 0.67 | 0.578055 |
|
Target: 5'- cGGcCuUUCGGCGgggcgGCCCguaUGCGCg -3' miRNA: 3'- cCCuGcAAGCCGCaa---CGGGug-ACGCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 6881 | 0.66 | 0.653332 |
|
Target: 5'- uGGcCG-UCGGCGggaacUGCUCGCgcauaGCGCg -3' miRNA: 3'- cCCuGCaAGCCGCa----ACGGGUGa----CGCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 47072 | 0.66 | 0.653332 |
|
Target: 5'- cGGcGGCGgcacgagcUUCGGCGcaccGCUCAC-GCGCa -3' miRNA: 3'- -CC-CUGC--------AAGCCGCaa--CGGGUGaCGCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 44894 | 0.66 | 0.664085 |
|
Target: 5'- -cGACGcUUCGGCGcgcugaGCUCcuGCUGUGCg -3' miRNA: 3'- ccCUGC-AAGCCGCaa----CGGG--UGACGCG- -5' |
|||||||
| 24890 | 5' | -57 | NC_005284.1 | + | 8196 | 1.13 | 0.000411 |
|
Target: 5'- cGGGACGUUCGGCGUUGCCCACUGCGCc -3' miRNA: 3'- -CCCUGCAAGCCGCAACGGGUGACGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home