miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24891 3' -51.9 NC_005284.1 + 5512 0.66 0.877423
Target:  5'- ---cCGCCCGCGggCGGUCAuuuuuUUGACa -3'
miRNA:   3'- agaaGCGGGCGUa-GCUAGUc----AACUGc -5'
24891 3' -51.9 NC_005284.1 + 17709 0.67 0.861223
Target:  5'- aUC-UCGCCggCGCGUCGAUggCGGUcgagGACGu -3'
miRNA:   3'- -AGaAGCGG--GCGUAGCUA--GUCAa---CUGC- -5'
24891 3' -51.9 NC_005284.1 + 49245 0.68 0.797186
Target:  5'- aCUUCaacgacauCCCGCG-CGAUCAGgaGGCGa -3'
miRNA:   3'- aGAAGc-------GGGCGUaGCUAGUCaaCUGC- -5'
24891 3' -51.9 NC_005284.1 + 7495 0.68 0.777119
Target:  5'- --cUCGCgCGCGUUGAUCAcgcGgcGACGg -3'
miRNA:   3'- agaAGCGgGCGUAGCUAGU---CaaCUGC- -5'
24891 3' -51.9 NC_005284.1 + 5161 0.69 0.75643
Target:  5'- --aUCGaCUggGCGUCGAUCgAGUUGACGa -3'
miRNA:   3'- agaAGCgGG--CGUAGCUAG-UCAACUGC- -5'
24891 3' -51.9 NC_005284.1 + 35814 0.69 0.735213
Target:  5'- uUCgUCGCCCGCGUaGAUC-GUUG-CGu -3'
miRNA:   3'- -AGaAGCGGGCGUAgCUAGuCAACuGC- -5'
24891 3' -51.9 NC_005284.1 + 1761 0.69 0.724437
Target:  5'- gCUUUGCCCGCucAUCGAcuugCAGUgcaGCGg -3'
miRNA:   3'- aGAAGCGGGCG--UAGCUa---GUCAac-UGC- -5'
24891 3' -51.9 NC_005284.1 + 48709 0.71 0.624586
Target:  5'- cUCUUCGcCCCGC-UCGGaaguUCGGU-GACGc -3'
miRNA:   3'- -AGAAGC-GGGCGuAGCU----AGUCAaCUGC- -5'
24891 3' -51.9 NC_005284.1 + 44482 0.71 0.613381
Target:  5'- gCggCGCCUGCAugUCGAUCAGacucGACGu -3'
miRNA:   3'- aGaaGCGGGCGU--AGCUAGUCaa--CUGC- -5'
24891 3' -51.9 NC_005284.1 + 10850 0.73 0.525119
Target:  5'- cUCUcgUCGCCgCGCAgc-AUCAGUUGGCGc -3'
miRNA:   3'- -AGA--AGCGG-GCGUagcUAGUCAACUGC- -5'
24891 3' -51.9 NC_005284.1 + 7917 0.73 0.503739
Target:  5'- --aUCGCCgGCGcaaggucCGGUCGGUUGGCGa -3'
miRNA:   3'- agaAGCGGgCGUa------GCUAGUCAACUGC- -5'
24891 3' -51.9 NC_005284.1 + 47432 0.73 0.493191
Target:  5'- --aUCGgCCGCGUCGAgaUCGGUcGACGc -3'
miRNA:   3'- agaAGCgGGCGUAGCU--AGUCAaCUGC- -5'
24891 3' -51.9 NC_005284.1 + 7462 1.11 0.001837
Target:  5'- cUCUUCGCCCGCAUCGAUCAGUUGACGg -3'
miRNA:   3'- -AGAAGCGGGCGUAGCUAGUCAACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.