miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24891 5' -57.7 NC_005284.1 + 39500 0.66 0.656563
Target:  5'- gGCGCG-GUUGGUCAgugcaUGUGGUGcucgccGCGGc -3'
miRNA:   3'- gCGCGCgCAACUAGU-----GCGCCGC------UGCC- -5'
24891 5' -57.7 NC_005284.1 + 9830 0.66 0.655501
Target:  5'- gGCGCGCGc--AUCacgggcacgcccuACGCGGCGAUc- -3'
miRNA:   3'- gCGCGCGCaacUAG-------------UGCGCCGCUGcc -5'
24891 5' -57.7 NC_005284.1 + 23305 0.66 0.655501
Target:  5'- gGCGCGCaaUGcgCGCuuuuccgGCGGCacGGCGGu -3'
miRNA:   3'- gCGCGCGcaACuaGUG-------CGCCG--CUGCC- -5'
24891 5' -57.7 NC_005284.1 + 16102 0.66 0.645937
Target:  5'- gGCGCcgcacuCGUUGccguUgGCGCGGUGGCGa -3'
miRNA:   3'- gCGCGc-----GCAACu---AgUGCGCCGCUGCc -5'
24891 5' -57.7 NC_005284.1 + 45888 0.66 0.645937
Target:  5'- uCGCGUcgaGCGguugccgUGGUCGCGC-GCGAUGc -3'
miRNA:   3'- -GCGCG---CGCa------ACUAGUGCGcCGCUGCc -5'
24891 5' -57.7 NC_005284.1 + 26313 0.66 0.639555
Target:  5'- gCGCGUGCGagcgGAaagcauggacauucuUCAgCGCGGC-ACGGu -3'
miRNA:   3'- -GCGCGCGCaa--CU---------------AGU-GCGCCGcUGCC- -5'
24891 5' -57.7 NC_005284.1 + 43864 0.66 0.635298
Target:  5'- aGCGCGcCGUUGAUgaucCGCGCGucguguGCGAaacgcuccggcCGGa -3'
miRNA:   3'- gCGCGC-GCAACUA----GUGCGC------CGCU-----------GCC- -5'
24891 5' -57.7 NC_005284.1 + 11872 0.66 0.635298
Target:  5'- gGCGCGuCGgcgUGAa-GCG-GGCGAUGGc -3'
miRNA:   3'- gCGCGC-GCa--ACUagUGCgCCGCUGCC- -5'
24891 5' -57.7 NC_005284.1 + 10065 0.66 0.614023
Target:  5'- uCGUGaGCGagcgGAaCGCGCGGCGACc- -3'
miRNA:   3'- -GCGCgCGCaa--CUaGUGCGCCGCUGcc -5'
24891 5' -57.7 NC_005284.1 + 22841 0.66 0.614023
Target:  5'- aGCGUGCc--GAUucaguaCACGauaGGCGGCGGg -3'
miRNA:   3'- gCGCGCGcaaCUA------GUGCg--CCGCUGCC- -5'
24891 5' -57.7 NC_005284.1 + 7995 0.66 0.61296
Target:  5'- gCGCGCGCGagUGAcgaCGCGCacaugcaGGCGaaugcGCGGc -3'
miRNA:   3'- -GCGCGCGCa-ACUa--GUGCG-------CCGC-----UGCC- -5'
24891 5' -57.7 NC_005284.1 + 54469 0.66 0.607648
Target:  5'- gGUGCGCGgcaaucGUCAUGCGcgaggauacggaaccGCGugGGa -3'
miRNA:   3'- gCGCGCGCaac---UAGUGCGC---------------CGCugCC- -5'
24891 5' -57.7 NC_005284.1 + 8713 0.66 0.603402
Target:  5'- uGCGCGCGc---UCgACGCGGCG-CGc -3'
miRNA:   3'- gCGCGCGCaacuAG-UGCGCCGCuGCc -5'
24891 5' -57.7 NC_005284.1 + 32874 0.66 0.603402
Target:  5'- -uCGCGC--UGAUCGuCGcCGGCGACGc -3'
miRNA:   3'- gcGCGCGcaACUAGU-GC-GCCGCUGCc -5'
24891 5' -57.7 NC_005284.1 + 4588 0.67 0.597041
Target:  5'- aGUGCGCGUUcgcgucGAUCgcaagagcaucaugaACGUGccuGCGACGGu -3'
miRNA:   3'- gCGCGCGCAA------CUAG---------------UGCGC---CGCUGCC- -5'
24891 5' -57.7 NC_005284.1 + 7143 0.67 0.592805
Target:  5'- -uCGCGCGUUGcUCGuCG-GGCGACa- -3'
miRNA:   3'- gcGCGCGCAACuAGU-GCgCCGCUGcc -5'
24891 5' -57.7 NC_005284.1 + 20981 0.67 0.592805
Target:  5'- uGCGUGCGggcGAUUACGaaCGGCG-CGa -3'
miRNA:   3'- gCGCGCGCaa-CUAGUGC--GCCGCuGCc -5'
24891 5' -57.7 NC_005284.1 + 43931 0.67 0.592805
Target:  5'- -uUGCGCcaacUGAUgcUGCGCGGCGACGa -3'
miRNA:   3'- gcGCGCGca--ACUA--GUGCGCCGCUGCc -5'
24891 5' -57.7 NC_005284.1 + 15472 0.67 0.582239
Target:  5'- uCGUGCGCGacUGGUaucucgccgaGCGCGGCGuCGc -3'
miRNA:   3'- -GCGCGCGCa-ACUAg---------UGCGCCGCuGCc -5'
24891 5' -57.7 NC_005284.1 + 9586 0.67 0.582239
Target:  5'- aGCGCaG-GgcGAUCGCGCugccGCGGCGGc -3'
miRNA:   3'- gCGCG-CgCaaCUAGUGCGc---CGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.