miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24891 5' -57.7 NC_005284.1 + 9754 0.68 0.509755
Target:  5'- aGCGCG-GgcGGUCGa--GGCGACGGc -3'
miRNA:   3'- gCGCGCgCaaCUAGUgcgCCGCUGCC- -5'
24891 5' -57.7 NC_005284.1 + 21575 0.7 0.422736
Target:  5'- gCGCGgGCGUUcGA-CGCGCaGCGGCa- -3'
miRNA:   3'- -GCGCgCGCAA-CUaGUGCGcCGCUGcc -5'
24891 5' -57.7 NC_005284.1 + 32806 0.69 0.431971
Target:  5'- uGCGCGgGUUGcg-GgGCGGCGuCGGu -3'
miRNA:   3'- gCGCGCgCAACuagUgCGCCGCuGCC- -5'
24891 5' -57.7 NC_005284.1 + 30392 0.69 0.438504
Target:  5'- cCGCGUGUGcUGGUCGgcaugucgaucgucCGCGugcGCGACGGc -3'
miRNA:   3'- -GCGCGCGCaACUAGU--------------GCGC---CGCUGCC- -5'
24891 5' -57.7 NC_005284.1 + 21233 0.69 0.460362
Target:  5'- gGgGCGCacauAUCAgcuCGCGGCGGCGGu -3'
miRNA:   3'- gCgCGCGcaacUAGU---GCGCCGCUGCC- -5'
24891 5' -57.7 NC_005284.1 + 51730 0.69 0.460362
Target:  5'- aGCGCGUGUacgGAaagauCGCGGCGcgccuGCGGg -3'
miRNA:   3'- gCGCGCGCAa--CUagu--GCGCCGC-----UGCC- -5'
24891 5' -57.7 NC_005284.1 + 29203 0.69 0.470044
Target:  5'- gGaCGUGCGUUGGcuUCACGUcuGCGACGu -3'
miRNA:   3'- gC-GCGCGCAACU--AGUGCGc-CGCUGCc -5'
24891 5' -57.7 NC_005284.1 + 15676 0.69 0.470044
Target:  5'- aCGCGgGCGUguAUCu--CGGUGACGGg -3'
miRNA:   3'- -GCGCgCGCAacUAGugcGCCGCUGCC- -5'
24891 5' -57.7 NC_005284.1 + 49144 0.68 0.499689
Target:  5'- gGCGCGCGUc-GUCAa--GGCgGACGGg -3'
miRNA:   3'- gCGCGCGCAacUAGUgcgCCG-CUGCC- -5'
24891 5' -57.7 NC_005284.1 + 10097 0.7 0.410911
Target:  5'- cCGCgGCGgGUcUGAagacggcgaccgaaaGCGCGGCGACGGc -3'
miRNA:   3'- -GCG-CGCgCA-ACUag-------------UGCGCCGCUGCC- -5'
24891 5' -57.7 NC_005284.1 + 51490 0.7 0.404629
Target:  5'- uCGCGCGCuUUGGUCaaaugggggacACGCGG-GACGc -3'
miRNA:   3'- -GCGCGCGcAACUAG-----------UGCGCCgCUGCc -5'
24891 5' -57.7 NC_005284.1 + 11257 0.7 0.404629
Target:  5'- aCGCGgcaGCGgc--UCGCGCGGCGAaGGg -3'
miRNA:   3'- -GCGCg--CGCaacuAGUGCGCCGCUgCC- -5'
24891 5' -57.7 NC_005284.1 + 11665 0.74 0.233432
Target:  5'- aCGCGCGCGagcUGAaucaggccaucaaUCGCGUGaGCGACGa -3'
miRNA:   3'- -GCGCGCGCa--ACU-------------AGUGCGC-CGCUGCc -5'
24891 5' -57.7 NC_005284.1 + 6848 0.73 0.258667
Target:  5'- gCGCGCGCGaucGAUCGUGUgcucggagGGCGGCGGu -3'
miRNA:   3'- -GCGCGCGCaa-CUAGUGCG--------CCGCUGCC- -5'
24891 5' -57.7 NC_005284.1 + 16972 0.72 0.306098
Target:  5'- cCGCGUGCGccGcAUCACGCcgaacgcgcacacGGCGACGa -3'
miRNA:   3'- -GCGCGCGCaaC-UAGUGCG-------------CCGCUGCc -5'
24891 5' -57.7 NC_005284.1 + 9245 0.71 0.329484
Target:  5'- aCGCGCGCGg----CGgGCGGC-ACGGa -3'
miRNA:   3'- -GCGCGCGCaacuaGUgCGCCGcUGCC- -5'
24891 5' -57.7 NC_005284.1 + 15721 0.71 0.337304
Target:  5'- aCGgGCGUcuGUcGAcgCGCGCGGUGugGGg -3'
miRNA:   3'- -GCgCGCG--CAaCUa-GUGCGCCGCugCC- -5'
24891 5' -57.7 NC_005284.1 + 38967 0.71 0.337304
Target:  5'- uCGUGCGCGaugcUGAUCcgcgggcugcGCGCuGGCGACGc -3'
miRNA:   3'- -GCGCGCGCa---ACUAG----------UGCG-CCGCUGCc -5'
24891 5' -57.7 NC_005284.1 + 47755 0.71 0.346061
Target:  5'- gGCGCGCGUacguccgcguaagcaGAUCGagGCGGCGcucGCGGa -3'
miRNA:   3'- gCGCGCGCAa--------------CUAGUg-CGCCGC---UGCC- -5'
24891 5' -57.7 NC_005284.1 + 47662 0.7 0.387018
Target:  5'- aCGCGCgaagguucagGCGUUGAUCgAUGCcGCuGACGGc -3'
miRNA:   3'- -GCGCG----------CGCAACUAG-UGCGcCG-CUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.