miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24892 5' -56.6 NC_005284.1 + 35344 0.66 0.71114
Target:  5'- cGUCGGaUuccaugcugaugaauGCCgauUCGAUGCCGAACGCu- -3'
miRNA:   3'- cCAGCC-G---------------UGG---AGCUGCGGCUUGUGcu -5'
24892 5' -56.6 NC_005284.1 + 159 0.66 0.706946
Target:  5'- cGGcUUGGuCACgaacaUCGAgcCGCCGGACugGAu -3'
miRNA:   3'- -CC-AGCC-GUGg----AGCU--GCGGCUUGugCU- -5'
24892 5' -56.6 NC_005284.1 + 15271 0.66 0.696415
Target:  5'- --cCGGCGCaUCGGCacaGCCGAccgacgaggaccGCACGAu -3'
miRNA:   3'- ccaGCCGUGgAGCUG---CGGCU------------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 37055 0.66 0.696415
Target:  5'- cGGUgCGccuGCGCCUgCGACgugcaGCCGAACGCc- -3'
miRNA:   3'- -CCA-GC---CGUGGA-GCUG-----CGGCUUGUGcu -5'
24892 5' -56.6 NC_005284.1 + 19017 0.66 0.696415
Target:  5'- uGGUC-GCugCaggcggCGAuCGCCGAGgGCGAu -3'
miRNA:   3'- -CCAGcCGugGa-----GCU-GCGGCUUgUGCU- -5'
24892 5' -56.6 NC_005284.1 + 14659 0.66 0.696415
Target:  5'- cGGcCGGCaAUC-CGACGgCGGACcCGAa -3'
miRNA:   3'- -CCaGCCG-UGGaGCUGCgGCUUGuGCU- -5'
24892 5' -56.6 NC_005284.1 + 37416 0.66 0.685824
Target:  5'- --aCGGCuCCUUGcCGCCcuucccgucGGACACGAg -3'
miRNA:   3'- ccaGCCGuGGAGCuGCGG---------CUUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 10135 0.66 0.685824
Target:  5'- --aCGGCGCagaCGGCGCucgcgcguaCGGGCACGAu -3'
miRNA:   3'- ccaGCCGUGga-GCUGCG---------GCUUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 10631 0.66 0.685824
Target:  5'- uGUCGGCGaCgagCGGCGgCGAagcgcuGCGCGAg -3'
miRNA:   3'- cCAGCCGUgGa--GCUGCgGCU------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 39579 0.66 0.685824
Target:  5'- -uUCGGCcgcugcguaguCCUcCGACG-CGAGCGCGAa -3'
miRNA:   3'- ccAGCCGu----------GGA-GCUGCgGCUUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 31517 0.66 0.675184
Target:  5'- -aUCGGCACCgCG-CGCCuuaAACGCGu -3'
miRNA:   3'- ccAGCCGUGGaGCuGCGGc--UUGUGCu -5'
24892 5' -56.6 NC_005284.1 + 29879 0.66 0.668781
Target:  5'- uGGUCGGCGCCggcguguuccaaggCGAaUGUCGAGaagagcacUACGAg -3'
miRNA:   3'- -CCAGCCGUGGa-------------GCU-GCGGCUU--------GUGCU- -5'
24892 5' -56.6 NC_005284.1 + 8982 0.66 0.664505
Target:  5'- cGUgCGGaCACCUU--CGCCGAGCAUGc -3'
miRNA:   3'- cCA-GCC-GUGGAGcuGCGGCUUGUGCu -5'
24892 5' -56.6 NC_005284.1 + 46552 0.66 0.653798
Target:  5'- --aCGGCAgUUCGGgcgauccgauguUGCCGAGCAUGGc -3'
miRNA:   3'- ccaGCCGUgGAGCU------------GCGGCUUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 44324 0.66 0.652726
Target:  5'- cGUCGGCACCaUGacacuuuGCGCCGccCGCGu -3'
miRNA:   3'- cCAGCCGUGGaGC-------UGCGGCuuGUGCu -5'
24892 5' -56.6 NC_005284.1 + 19179 0.66 0.652726
Target:  5'- uGUCGGCGCUgUCGACagGCUGccugagucuccgcAGCGCGAc -3'
miRNA:   3'- cCAGCCGUGG-AGCUG--CGGC-------------UUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 34580 0.67 0.643071
Target:  5'- -uUCGGCuuUCUCGGCGUCGcuguAugGCGAa -3'
miRNA:   3'- ccAGCCGu-GGAGCUGCGGC----UugUGCU- -5'
24892 5' -56.6 NC_005284.1 + 24542 0.67 0.624819
Target:  5'- cGGaCGGCcggacaauauccgGCCagacCGACGCCGAcggcuacacgcagugGCACGAg -3'
miRNA:   3'- -CCaGCCG-------------UGGa---GCUGCGGCU---------------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 23161 0.67 0.621599
Target:  5'- aGGUgGaauGCGcCCUCGACGCCGcccGCACc- -3'
miRNA:   3'- -CCAgC---CGU-GGAGCUGCGGCu--UGUGcu -5'
24892 5' -56.6 NC_005284.1 + 15987 0.67 0.621599
Target:  5'- cGGcCGGCGCaauCUUGACGaggaCGAGCuCGAg -3'
miRNA:   3'- -CCaGCCGUG---GAGCUGCg---GCUUGuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.