Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24892 | 5' | -56.6 | NC_005284.1 | + | 7266 | 1.11 | 0.000698 |
Target: 5'- cGGUCGGCACCUCGACGCCGAACACGAc -3' miRNA: 3'- -CCAGCCGUGGAGCUGCGGCUUGUGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 30402 | 0.77 | 0.182038 |
Target: 5'- uGGUCGGCAUgUCGAuCGuCCGcguGCGCGAc -3' miRNA: 3'- -CCAGCCGUGgAGCU-GC-GGCu--UGUGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 33155 | 0.76 | 0.186892 |
Target: 5'- -aUCGcacGCugCUCGGCGUCGAGCGCGGc -3' miRNA: 3'- ccAGC---CGugGAGCUGCGGCUUGUGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 24126 | 0.76 | 0.186892 |
Target: 5'- cGGcCGGCugCUCGACGgCCGcACGCa- -3' miRNA: 3'- -CCaGCCGugGAGCUGC-GGCuUGUGcu -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 14597 | 0.74 | 0.248151 |
Target: 5'- cGUCGGCGCgaaaguguucCGGCGCCGAACGCu- -3' miRNA: 3'- cCAGCCGUGga--------GCUGCGGCUUGUGcu -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 15948 | 0.74 | 0.254476 |
Target: 5'- cGUCGGCGCg-CGACGCCGGccCACGu -3' miRNA: 3'- cCAGCCGUGgaGCUGCGGCUu-GUGCu -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 35516 | 0.74 | 0.254476 |
Target: 5'- cGGUCGucuGCACCUugaucugauaCGACGCCGcGACGCGu -3' miRNA: 3'- -CCAGC---CGUGGA----------GCUGCGGC-UUGUGCu -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 44430 | 0.74 | 0.257042 |
Target: 5'- cGUUGGCgacuagauucgcgugAUCUCGACGCCGcuucGCACGAg -3' miRNA: 3'- cCAGCCG---------------UGGAGCUGCGGCu---UGUGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 21622 | 0.74 | 0.260932 |
Target: 5'- -cUCGcGCGCCgcgcUCGACGCCGAGCagcguGCGAu -3' miRNA: 3'- ccAGC-CGUGG----AGCUGCGGCUUG-----UGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 45156 | 0.73 | 0.288095 |
Target: 5'- uGGUCGacGCACggCGACGUCGGGCAgGAg -3' miRNA: 3'- -CCAGC--CGUGgaGCUGCGGCUUGUgCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 9513 | 0.73 | 0.29093 |
Target: 5'- gGGUCGGCGCCcggCGAgcgcuCGUCGAggagacgaucaagcaACACGAg -3' miRNA: 3'- -CCAGCCGUGGa--GCU-----GCGGCU---------------UGUGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 32940 | 0.73 | 0.309892 |
Target: 5'- cGG-CGGCACCaUCGcccACGCCGGcggcGCugGAa -3' miRNA: 3'- -CCaGCCGUGG-AGC---UGCGGCU----UGugCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 43436 | 0.72 | 0.364701 |
Target: 5'- uGUCGGUugcgaccGCCUCGACGCgCaguuGCGCGAu -3' miRNA: 3'- cCAGCCG-------UGGAGCUGCG-Gcu--UGUGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 39518 | 0.71 | 0.391417 |
Target: 5'- cGGUCGGCuguGCCgauGCGCCgGGAUGCGAa -3' miRNA: 3'- -CCAGCCG---UGGagcUGCGG-CUUGUGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 10571 | 0.71 | 0.391417 |
Target: 5'- cGUCGa-ACCUCGGCGUCGAcgagaaaucGCGCGAg -3' miRNA: 3'- cCAGCcgUGGAGCUGCGGCU---------UGUGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 5692 | 0.71 | 0.400303 |
Target: 5'- -cUCGcGCugCUCGAUGCCGAGuugcuuacCGCGGu -3' miRNA: 3'- ccAGC-CGugGAGCUGCGGCUU--------GUGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 49365 | 0.71 | 0.400303 |
Target: 5'- cGGUC-GCAgCUU--CGCCGAGCGCGAg -3' miRNA: 3'- -CCAGcCGUgGAGcuGCGGCUUGUGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 10945 | 0.71 | 0.409317 |
Target: 5'- --aUGGCcgGCCUCGuCGCCGGACgaGCGGa -3' miRNA: 3'- ccaGCCG--UGGAGCuGCGGCUUG--UGCU- -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 43519 | 0.7 | 0.427718 |
Target: 5'- -aUCGGCugCugugauUCGAUGCCGAuaGCGCGc -3' miRNA: 3'- ccAGCCGugG------AGCUGCGGCU--UGUGCu -5' |
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24892 | 5' | -56.6 | NC_005284.1 | + | 37765 | 0.7 | 0.427718 |
Target: 5'- -cUCGGUaaucGCCUCGACGuuGAuCGCGu -3' miRNA: 3'- ccAGCCG----UGGAGCUGCggCUuGUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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