miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24892 5' -56.6 NC_005284.1 + 36358 0.67 0.609799
Target:  5'- --cCGGCACCUCGACcugcaggccgccuGUCGAcgGCACc- -3'
miRNA:   3'- ccaGCCGUGGAGCUG-------------CGGCU--UGUGcu -5'
24892 5' -56.6 NC_005284.1 + 16174 0.67 0.600162
Target:  5'- gGGcUCGGCGCgUCGaugGCGCUGGGCGg-- -3'
miRNA:   3'- -CC-AGCCGUGgAGC---UGCGGCUUGUgcu -5'
24892 5' -56.6 NC_005284.1 + 15586 0.67 0.600162
Target:  5'- --cUGGCuuUCUCGACGUCGGcCGCGAc -3'
miRNA:   3'- ccaGCCGu-GGAGCUGCGGCUuGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 36863 0.67 0.600162
Target:  5'- uGUCGGCGCCU---UGUCGAGCGUGAu -3'
miRNA:   3'- cCAGCCGUGGAgcuGCGGCUUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 46744 0.67 0.600162
Target:  5'- -aUCGG-ACUacgaagUCGGCGCCGAGuCACGGg -3'
miRNA:   3'- ccAGCCgUGG------AGCUGCGGCUU-GUGCU- -5'
24892 5' -56.6 NC_005284.1 + 12133 0.68 0.589478
Target:  5'- cGUCGGCGCgCUCGGuggUGCgGcaAGCGCGGc -3'
miRNA:   3'- cCAGCCGUG-GAGCU---GCGgC--UUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 8166 0.68 0.589478
Target:  5'- -uUCGGCAagCUCGACGUCGAcccggucgaagACGCa- -3'
miRNA:   3'- ccAGCCGUg-GAGCUGCGGCU-----------UGUGcu -5'
24892 5' -56.6 NC_005284.1 + 37791 0.68 0.589478
Target:  5'- nGUCGGCGa-UCGuCGCCGuguGCGCGu -3'
miRNA:   3'- cCAGCCGUggAGCuGCGGCu--UGUGCu -5'
24892 5' -56.6 NC_005284.1 + 36262 0.68 0.589478
Target:  5'- cGGUCaGUugCguaUCGACGCCGuACGCc- -3'
miRNA:   3'- -CCAGcCGugG---AGCUGCGGCuUGUGcu -5'
24892 5' -56.6 NC_005284.1 + 38105 0.68 0.578828
Target:  5'- --gCGGCACgC-CGACGCCGGccuCACGc -3'
miRNA:   3'- ccaGCCGUG-GaGCUGCGGCUu--GUGCu -5'
24892 5' -56.6 NC_005284.1 + 952 0.68 0.56822
Target:  5'- -uUCGGUGCCgaggUGuACGCCG-GCGCGAc -3'
miRNA:   3'- ccAGCCGUGGa---GC-UGCGGCuUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 14383 0.68 0.56822
Target:  5'- aGGUCGacuGCACggaaaUCGGCGCCGA-CAUGc -3'
miRNA:   3'- -CCAGC---CGUGg----AGCUGCGGCUuGUGCu -5'
24892 5' -56.6 NC_005284.1 + 47711 0.68 0.56822
Target:  5'- aGUCGGCaaGCCgaUCGGCGUCGGugaacgucgGCGCGu -3'
miRNA:   3'- cCAGCCG--UGG--AGCUGCGGCU---------UGUGCu -5'
24892 5' -56.6 NC_005284.1 + 9220 0.68 0.56822
Target:  5'- cGUCGGUaAUCUCGucgagGCGCUGAcgcGCGCGGc -3'
miRNA:   3'- cCAGCCG-UGGAGC-----UGCGGCU---UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 5298 0.68 0.561879
Target:  5'- cGUCGGCGCCuucUCGAUGgCGGcucagaucuucgaccGCAUGGa -3'
miRNA:   3'- cCAGCCGUGG---AGCUGCgGCU---------------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 10202 0.68 0.557662
Target:  5'- cGGUCGGCGgCUuaccgggaauucUGGCGaCCGuggGCACGGu -3'
miRNA:   3'- -CCAGCCGUgGA------------GCUGC-GGCu--UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 47844 0.68 0.54716
Target:  5'- cGcCGGCGCCUucuccggugCGACGCCGAgauaccccuucGCACc- -3'
miRNA:   3'- cCaGCCGUGGA---------GCUGCGGCU-----------UGUGcu -5'
24892 5' -56.6 NC_005284.1 + 19247 0.68 0.54716
Target:  5'- -uUCGGCucgACCUCG-CGaCCGcGACACGGg -3'
miRNA:   3'- ccAGCCG---UGGAGCuGC-GGC-UUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 21516 0.69 0.526354
Target:  5'- cGGcCGGCGCUU--GCGUCGAGCACc- -3'
miRNA:   3'- -CCaGCCGUGGAgcUGCGGCUUGUGcu -5'
24892 5' -56.6 NC_005284.1 + 21542 0.69 0.526354
Target:  5'- -aUCGGCGCacaUCGGCuuGCCGAcgagcaggccGCGCGGg -3'
miRNA:   3'- ccAGCCGUGg--AGCUG--CGGCU----------UGUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.