miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24892 5' -56.6 NC_005284.1 + 159 0.66 0.706946
Target:  5'- cGGcUUGGuCACgaacaUCGAgcCGCCGGACugGAu -3'
miRNA:   3'- -CC-AGCC-GUGg----AGCU--GCGGCUUGugCU- -5'
24892 5' -56.6 NC_005284.1 + 952 0.68 0.56822
Target:  5'- -uUCGGUGCCgaggUGuACGCCG-GCGCGAc -3'
miRNA:   3'- ccAGCCGUGGa---GC-UGCGGCuUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 2982 0.7 0.427718
Target:  5'- uGG-CGGCGCCaUGAgGCCGGGaaaACGAu -3'
miRNA:   3'- -CCaGCCGUGGaGCUgCGGCUUg--UGCU- -5'
24892 5' -56.6 NC_005284.1 + 5298 0.68 0.561879
Target:  5'- cGUCGGCGCCuucUCGAUGgCGGcucagaucuucgaccGCAUGGa -3'
miRNA:   3'- cCAGCCGUGG---AGCUGCgGCU---------------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 5692 0.71 0.400303
Target:  5'- -cUCGcGCugCUCGAUGCCGAGuugcuuacCGCGGu -3'
miRNA:   3'- ccAGC-CGugGAGCUGCGGCUU--------GUGCU- -5'
24892 5' -56.6 NC_005284.1 + 7046 0.69 0.505852
Target:  5'- cGUaCGcGCGCCgcCGuacCGCCGAGCACGGc -3'
miRNA:   3'- cCA-GC-CGUGGa-GCu--GCGGCUUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 7266 1.11 0.000698
Target:  5'- cGGUCGGCACCUCGACGCCGAACACGAc -3'
miRNA:   3'- -CCAGCCGUGGAGCUGCGGCUUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 8166 0.68 0.589478
Target:  5'- -uUCGGCAagCUCGACGUCGAcccggucgaagACGCa- -3'
miRNA:   3'- ccAGCCGUg-GAGCUGCGGCU-----------UGUGcu -5'
24892 5' -56.6 NC_005284.1 + 8982 0.66 0.664505
Target:  5'- cGUgCGGaCACCUU--CGCCGAGCAUGc -3'
miRNA:   3'- cCA-GCC-GUGGAGcuGCGGCUUGUGCu -5'
24892 5' -56.6 NC_005284.1 + 9220 0.68 0.56822
Target:  5'- cGUCGGUaAUCUCGucgagGCGCUGAcgcGCGCGGc -3'
miRNA:   3'- cCAGCCG-UGGAGC-----UGCGGCU---UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 9513 0.73 0.29093
Target:  5'- gGGUCGGCGCCcggCGAgcgcuCGUCGAggagacgaucaagcaACACGAg -3'
miRNA:   3'- -CCAGCCGUGGa--GCU-----GCGGCU---------------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 10135 0.66 0.685824
Target:  5'- --aCGGCGCagaCGGCGCucgcgcguaCGGGCACGAu -3'
miRNA:   3'- ccaGCCGUGga-GCUGCG---------GCUUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 10202 0.68 0.557662
Target:  5'- cGGUCGGCGgCUuaccgggaauucUGGCGaCCGuggGCACGGu -3'
miRNA:   3'- -CCAGCCGUgGA------------GCUGC-GGCu--UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 10571 0.71 0.391417
Target:  5'- cGUCGa-ACCUCGGCGUCGAcgagaaaucGCGCGAg -3'
miRNA:   3'- cCAGCcgUGGAGCUGCGGCU---------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 10631 0.66 0.685824
Target:  5'- uGUCGGCGaCgagCGGCGgCGAagcgcuGCGCGAg -3'
miRNA:   3'- cCAGCCGUgGa--GCUGCgGCU------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 10945 0.71 0.409317
Target:  5'- --aUGGCcgGCCUCGuCGCCGGACgaGCGGa -3'
miRNA:   3'- ccaGCCG--UGGAGCuGCGGCUUG--UGCU- -5'
24892 5' -56.6 NC_005284.1 + 12133 0.68 0.589478
Target:  5'- cGUCGGCGCgCUCGGuggUGCgGcaAGCGCGGc -3'
miRNA:   3'- cCAGCCGUG-GAGCU---GCGgC--UUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 14383 0.68 0.56822
Target:  5'- aGGUCGacuGCACggaaaUCGGCGCCGA-CAUGc -3'
miRNA:   3'- -CCAGC---CGUGg----AGCUGCGGCUuGUGCu -5'
24892 5' -56.6 NC_005284.1 + 14597 0.74 0.248151
Target:  5'- cGUCGGCGCgaaaguguucCGGCGCCGAACGCu- -3'
miRNA:   3'- cCAGCCGUGga--------GCUGCGGCUUGUGcu -5'
24892 5' -56.6 NC_005284.1 + 14659 0.66 0.696415
Target:  5'- cGGcCGGCaAUC-CGACGgCGGACcCGAa -3'
miRNA:   3'- -CCaGCCG-UGGaGCUGCgGCUUGuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.