miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24892 5' -56.6 NC_005284.1 + 21542 0.69 0.526354
Target:  5'- -aUCGGCGCacaUCGGCuuGCCGAcgagcaggccGCGCGGg -3'
miRNA:   3'- ccAGCCGUGg--AGCUG--CGGCU----------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 31335 0.7 0.4466
Target:  5'- cGUCGGCGag-CGACGCgcaGAACACGc -3'
miRNA:   3'- cCAGCCGUggaGCUGCGg--CUUGUGCu -5'
24892 5' -56.6 NC_005284.1 + 18042 0.69 0.475767
Target:  5'- cGcCGaGCGCUUCGACGCCGAuccgguggcggGCGCu- -3'
miRNA:   3'- cCaGC-CGUGGAGCUGCGGCU-----------UGUGcu -5'
24892 5' -56.6 NC_005284.1 + 16555 0.69 0.485699
Target:  5'- aGUCGGUcuAUCUCGAcggcaCGCCGAuccagaACGCGGa -3'
miRNA:   3'- cCAGCCG--UGGAGCU-----GCGGCU------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 47170 0.69 0.495729
Target:  5'- --cCGGCGCgUacaucaGGCGCCGAACcCGAa -3'
miRNA:   3'- ccaGCCGUGgAg-----CUGCGGCUUGuGCU- -5'
24892 5' -56.6 NC_005284.1 + 15834 0.69 0.516062
Target:  5'- uGUaCGGCACgCUCGGCGUgcguuuCGGACGCa- -3'
miRNA:   3'- cCA-GCCGUG-GAGCUGCG------GCUUGUGcu -5'
24892 5' -56.6 NC_005284.1 + 35152 0.69 0.516062
Target:  5'- cGGUCGGCuCCgUUGuAUGCCGugUGCGAu -3'
miRNA:   3'- -CCAGCCGuGG-AGC-UGCGGCuuGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 16099 0.69 0.526354
Target:  5'- -cUCGGCGCCgcacUCGuuGCCGuuGGCGCGGu -3'
miRNA:   3'- ccAGCCGUGG----AGCugCGGC--UUGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 21516 0.69 0.526354
Target:  5'- cGGcCGGCGCUU--GCGUCGAGCACc- -3'
miRNA:   3'- -CCaGCCGUGGAgcUGCGGCUUGUGcu -5'
24892 5' -56.6 NC_005284.1 + 43519 0.7 0.427718
Target:  5'- -aUCGGCugCugugauUCGAUGCCGAuaGCGCGc -3'
miRNA:   3'- ccAGCCGugG------AGCUGCGGCU--UGUGCu -5'
24892 5' -56.6 NC_005284.1 + 2982 0.7 0.427718
Target:  5'- uGG-CGGCGCCaUGAgGCCGGGaaaACGAu -3'
miRNA:   3'- -CCaGCCGUGGaGCUgCGGCUUg--UGCU- -5'
24892 5' -56.6 NC_005284.1 + 10945 0.71 0.409317
Target:  5'- --aUGGCcgGCCUCGuCGCCGGACgaGCGGa -3'
miRNA:   3'- ccaGCCG--UGGAGCuGCGGCUUG--UGCU- -5'
24892 5' -56.6 NC_005284.1 + 14597 0.74 0.248151
Target:  5'- cGUCGGCGCgaaaguguucCGGCGCCGAACGCu- -3'
miRNA:   3'- cCAGCCGUGga--------GCUGCGGCUUGUGcu -5'
24892 5' -56.6 NC_005284.1 + 15948 0.74 0.254476
Target:  5'- cGUCGGCGCg-CGACGCCGGccCACGu -3'
miRNA:   3'- cCAGCCGUGgaGCUGCGGCUu-GUGCu -5'
24892 5' -56.6 NC_005284.1 + 44430 0.74 0.257042
Target:  5'- cGUUGGCgacuagauucgcgugAUCUCGACGCCGcuucGCACGAg -3'
miRNA:   3'- cCAGCCG---------------UGGAGCUGCGGCu---UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 21622 0.74 0.260932
Target:  5'- -cUCGcGCGCCgcgcUCGACGCCGAGCagcguGCGAu -3'
miRNA:   3'- ccAGC-CGUGG----AGCUGCGGCUUG-----UGCU- -5'
24892 5' -56.6 NC_005284.1 + 45156 0.73 0.288095
Target:  5'- uGGUCGacGCACggCGACGUCGGGCAgGAg -3'
miRNA:   3'- -CCAGC--CGUGgaGCUGCGGCUUGUgCU- -5'
24892 5' -56.6 NC_005284.1 + 9513 0.73 0.29093
Target:  5'- gGGUCGGCGCCcggCGAgcgcuCGUCGAggagacgaucaagcaACACGAg -3'
miRNA:   3'- -CCAGCCGUGGa--GCU-----GCGGCU---------------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 10571 0.71 0.391417
Target:  5'- cGUCGa-ACCUCGGCGUCGAcgagaaaucGCGCGAg -3'
miRNA:   3'- cCAGCcgUGGAGCUGCGGCU---------UGUGCU- -5'
24892 5' -56.6 NC_005284.1 + 49365 0.71 0.400303
Target:  5'- cGGUC-GCAgCUU--CGCCGAGCGCGAg -3'
miRNA:   3'- -CCAGcCGUgGAGcuGCGGCUUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.