miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24893 3' -55.7 NC_005284.1 + 5233 0.66 0.694684
Target:  5'- aCGaCGcCGCGCCUGUGGAaUCUGCc-- -3'
miRNA:   3'- -GC-GCaGUGCGGGCGCUUaAGGCGuua -5'
24893 3' -55.7 NC_005284.1 + 39800 0.66 0.683812
Target:  5'- gCGCGUCACGCCauCGug--UCGCAc- -3'
miRNA:   3'- -GCGCAGUGCGGgcGCuuaaGGCGUua -5'
24893 3' -55.7 NC_005284.1 + 50119 0.66 0.683812
Target:  5'- gGCGaUCGCGCaCGCGGcgUUCGCc-- -3'
miRNA:   3'- gCGC-AGUGCGgGCGCUuaAGGCGuua -5'
24893 3' -55.7 NC_005284.1 + 3401 0.66 0.672891
Target:  5'- cCGCGUCGaGCCCGCuGAAguucaCUGUAGa -3'
miRNA:   3'- -GCGCAGUgCGGGCG-CUUaa---GGCGUUa -5'
24893 3' -55.7 NC_005284.1 + 23364 0.66 0.661931
Target:  5'- aGCGgcgCAcguCGCCCGCGAAcUggCGCAAg -3'
miRNA:   3'- gCGCa--GU---GCGGGCGCUU-AagGCGUUa -5'
24893 3' -55.7 NC_005284.1 + 42321 0.66 0.650943
Target:  5'- cCGCGaUCAgGCUCGCGGggUUCGaCGAUc -3'
miRNA:   3'- -GCGC-AGUgCGGGCGCUuaAGGC-GUUA- -5'
24893 3' -55.7 NC_005284.1 + 8329 0.67 0.628926
Target:  5'- aGCGUCggACGCUCgGCGGcAUUCgGCGAc -3'
miRNA:   3'- gCGCAG--UGCGGG-CGCU-UAAGgCGUUa -5'
24893 3' -55.7 NC_005284.1 + 45132 0.67 0.617917
Target:  5'- uCGCucgCAUGCCCGCGAGcUCgGCc-- -3'
miRNA:   3'- -GCGca-GUGCGGGCGCUUaAGgCGuua -5'
24893 3' -55.7 NC_005284.1 + 9859 0.67 0.595945
Target:  5'- gGCGaUCAuCGCUCGCGAGacggcagCCGCAc- -3'
miRNA:   3'- gCGC-AGU-GCGGGCGCUUaa-----GGCGUua -5'
24893 3' -55.7 NC_005284.1 + 39125 0.67 0.595945
Target:  5'- ----aCACGCCCGCGuGAUUCgGCAc- -3'
miRNA:   3'- gcgcaGUGCGGGCGC-UUAAGgCGUua -5'
24893 3' -55.7 NC_005284.1 + 35893 0.68 0.585001
Target:  5'- aGCGccgacuucccgaUCugGCCgGCGAAauacUUCCGUAGUc -3'
miRNA:   3'- gCGC------------AGugCGGgCGCUU----AAGGCGUUA- -5'
24893 3' -55.7 NC_005284.1 + 15086 0.68 0.563238
Target:  5'- gGCGcaCGCGCUCGCaGAGUaUCCGCGc- -3'
miRNA:   3'- gCGCa-GUGCGGGCG-CUUA-AGGCGUua -5'
24893 3' -55.7 NC_005284.1 + 31098 0.68 0.563238
Target:  5'- aGCGU-ACGCgCGCGggUaCUGCGAg -3'
miRNA:   3'- gCGCAgUGCGgGCGCuuAaGGCGUUa -5'
24893 3' -55.7 NC_005284.1 + 44710 0.68 0.541698
Target:  5'- cCGCgGUCGCGgucgCCGCGcGUUCCGCu-- -3'
miRNA:   3'- -GCG-CAGUGCg---GGCGCuUAAGGCGuua -5'
24893 3' -55.7 NC_005284.1 + 2319 0.68 0.541698
Target:  5'- gGCGUCaACGCCCGCcaGAugcCUGCGGa -3'
miRNA:   3'- gCGCAG-UGCGGGCG--CUuaaGGCGUUa -5'
24893 3' -55.7 NC_005284.1 + 44380 0.68 0.529968
Target:  5'- gCGCGUCAucggcCGCCCGCGAcgccucuugcuucGUgcgcagCCGCu-- -3'
miRNA:   3'- -GCGCAGU-----GCGGGCGCU-------------UAa-----GGCGuua -5'
24893 3' -55.7 NC_005284.1 + 33431 0.69 0.52044
Target:  5'- aCGuCGUugCACGCCUGCGcgguAGUcgaUCCGCAGUg -3'
miRNA:   3'- -GC-GCA--GUGCGGGCGC----UUA---AGGCGUUA- -5'
24893 3' -55.7 NC_005284.1 + 36585 0.69 0.52044
Target:  5'- aGCGUC-CGCUCuuGAAUcUCCGCAGa -3'
miRNA:   3'- gCGCAGuGCGGGcgCUUA-AGGCGUUa -5'
24893 3' -55.7 NC_005284.1 + 7599 0.69 0.499515
Target:  5'- cCGCGUCACGUUCGCcGAcaaaUCGCAGUu -3'
miRNA:   3'- -GCGCAGUGCGGGCG-CUuaa-GGCGUUA- -5'
24893 3' -55.7 NC_005284.1 + 44113 0.69 0.499515
Target:  5'- cCGUGUCgaucGCGCCCGCGGcgcgcaccaGUUCCucgcGCAGc -3'
miRNA:   3'- -GCGCAG----UGCGGGCGCU---------UAAGG----CGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.