miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24893 5' -54 NC_005284.1 + 44411 0.66 0.807776
Target:  5'- cGAcgCGCGAUUa--CUGcCUCGUUGGCg -3'
miRNA:   3'- cCUa-GCGUUAAgggGAC-GAGCAGCCG- -5'
24893 5' -54 NC_005284.1 + 17212 0.66 0.807776
Target:  5'- aGGAcaGCAGcaUCaCCCUGCUCGcCGuGCc -3'
miRNA:   3'- -CCUagCGUUa-AG-GGGACGAGCaGC-CG- -5'
24893 5' -54 NC_005284.1 + 40079 0.66 0.788442
Target:  5'- -cGUCGCucUUCugcucgauccgCCaCUGCUgCGUCGGCa -3'
miRNA:   3'- ccUAGCGuuAAG-----------GG-GACGA-GCAGCCG- -5'
24893 5' -54 NC_005284.1 + 21295 0.66 0.788442
Target:  5'- ---cCGC--UUCCCC-GCUaUGUCGGCa -3'
miRNA:   3'- ccuaGCGuuAAGGGGaCGA-GCAGCCG- -5'
24893 5' -54 NC_005284.1 + 45444 0.66 0.788442
Target:  5'- cGGcGUCGCGAUUgUCgggcgaccagUUGCUCG-CGGCa -3'
miRNA:   3'- -CC-UAGCGUUAAgGG----------GACGAGCaGCCG- -5'
24893 5' -54 NC_005284.1 + 4603 0.67 0.748949
Target:  5'- cGAUCGCAAgagcaucaugaacgUgCCUGCgacgGUCGGCa -3'
miRNA:   3'- cCUAGCGUUaa------------GgGGACGag--CAGCCG- -5'
24893 5' -54 NC_005284.1 + 44902 0.67 0.737454
Target:  5'- cGGcgCGCugagCUCCUGCU-GUgCGGCu -3'
miRNA:   3'- -CCuaGCGuuaaGGGGACGAgCA-GCCG- -5'
24893 5' -54 NC_005284.1 + 50104 0.67 0.716235
Target:  5'- cGGcggCGCAAUgaUCCCC-GCUUGaCGGUc -3'
miRNA:   3'- -CCua-GCGUUA--AGGGGaCGAGCaGCCG- -5'
24893 5' -54 NC_005284.1 + 8065 0.68 0.705496
Target:  5'- cGAUUGCuGUUUUCgCUGCUCaUUGGCg -3'
miRNA:   3'- cCUAGCGuUAAGGG-GACGAGcAGCCG- -5'
24893 5' -54 NC_005284.1 + 17026 0.68 0.705496
Target:  5'- ----aGCAGUUCCCC-GCUUGcCGcGCg -3'
miRNA:   3'- ccuagCGUUAAGGGGaCGAGCaGC-CG- -5'
24893 5' -54 NC_005284.1 + 31001 0.68 0.694684
Target:  5'- cGGAUCGaCGAUgcggCUaaUCUGCUCGUCuuGCg -3'
miRNA:   3'- -CCUAGC-GUUAa---GG--GGACGAGCAGc-CG- -5'
24893 5' -54 NC_005284.1 + 41141 0.68 0.6936
Target:  5'- gGGAUgGCGAgauugguUUCgCCUGaCU-GUCGGCg -3'
miRNA:   3'- -CCUAgCGUU-------AAGgGGAC-GAgCAGCCG- -5'
24893 5' -54 NC_005284.1 + 49141 0.68 0.661931
Target:  5'- --cUCGCAGUUCCgCaGCUCGUUGa- -3'
miRNA:   3'- ccuAGCGUUAAGGgGaCGAGCAGCcg -5'
24893 5' -54 NC_005284.1 + 12109 0.68 0.661931
Target:  5'- gGGAUUcgGCGGUgUCUCUgaUGC-CGUCGGCg -3'
miRNA:   3'- -CCUAG--CGUUA-AGGGG--ACGaGCAGCCG- -5'
24893 5' -54 NC_005284.1 + 26011 0.68 0.661931
Target:  5'- uGGAUCGCGcaaAUUaUgCCgggGCUCGaugUCGGCg -3'
miRNA:   3'- -CCUAGCGU---UAA-GgGGa--CGAGC---AGCCG- -5'
24893 5' -54 NC_005284.1 + 13728 0.69 0.639938
Target:  5'- gGGAggcaCGCGGcgCCCC-GCgagaaaCGUCGGCg -3'
miRNA:   3'- -CCUa---GCGUUaaGGGGaCGa-----GCAGCCG- -5'
24893 5' -54 NC_005284.1 + 36598 0.69 0.60692
Target:  5'- cGAUCGCcgcguacUUCCCCgGCUCGUaCuGCg -3'
miRNA:   3'- cCUAGCGuu-----AAGGGGaCGAGCA-GcCG- -5'
24893 5' -54 NC_005284.1 + 47003 0.7 0.574096
Target:  5'- cGGUCGCAAUUgucaCUCUUGCUCGgCGaGCc -3'
miRNA:   3'- cCUAGCGUUAA----GGGGACGAGCaGC-CG- -5'
24893 5' -54 NC_005284.1 + 36930 0.7 0.541698
Target:  5'- uGAUCG-AGUUCaugaCCUGCUCGgggaGGCg -3'
miRNA:   3'- cCUAGCgUUAAGg---GGACGAGCag--CCG- -5'
24893 5' -54 NC_005284.1 + 32766 0.71 0.510979
Target:  5'- aGGAUCGUcgcgcucgcgcgCCUCUGCcggugCGUCGGCc -3'
miRNA:   3'- -CCUAGCGuuaa--------GGGGACGa----GCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.