miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24894 5' -56.7 NC_005284.1 + 44753 0.66 0.624255
Target:  5'- cGUGGCAaGCGCGacaucacgcucggcuUGCGCaaGGCCGCg -3'
miRNA:   3'- -UACUGUcUGUGC---------------AUGCGcaCCGGCGa -5'
24894 5' -56.7 NC_005284.1 + 52108 0.66 0.619854
Target:  5'- uUGugAGGCGCuucacagucGUACGCuGUGGCaGCa -3'
miRNA:   3'- uACugUCUGUG---------CAUGCG-CACCGgCGa -5'
24894 5' -56.7 NC_005284.1 + 7691 0.66 0.608863
Target:  5'- -cGACGuACAgCGUGCGCGUGaGCgGUg -3'
miRNA:   3'- uaCUGUcUGU-GCAUGCGCAC-CGgCGa -5'
24894 5' -56.7 NC_005284.1 + 21121 0.67 0.55438
Target:  5'- -cGAaAGACGUGUACGCG-GGCCaGCg -3'
miRNA:   3'- uaCUgUCUGUGCAUGCGCaCCGG-CGa -5'
24894 5' -56.7 NC_005284.1 + 4666 0.67 0.55438
Target:  5'- cAUGGCGaacGcCGCGUGCGCGaucGCCGCg -3'
miRNA:   3'- -UACUGU---CuGUGCAUGCGCac-CGGCGa -5'
24894 5' -56.7 NC_005284.1 + 27659 0.67 0.543637
Target:  5'- --cGCAGAUGCGU-CGCGgcgGGCaCGCg -3'
miRNA:   3'- uacUGUCUGUGCAuGCGCa--CCG-GCGa -5'
24894 5' -56.7 NC_005284.1 + 203 0.67 0.543637
Target:  5'- -aGGCgcgGGGCAUGUgggaGCGCGuUGuGCCGCUg -3'
miRNA:   3'- uaCUG---UCUGUGCA----UGCGC-AC-CGGCGA- -5'
24894 5' -56.7 NC_005284.1 + 3523 0.67 0.532964
Target:  5'- -cGAa--GCACGUucuucGCGCGUGGCuCGCUc -3'
miRNA:   3'- uaCUgucUGUGCA-----UGCGCACCG-GCGA- -5'
24894 5' -56.7 NC_005284.1 + 27114 0.68 0.460712
Target:  5'- -cGACGGAuCAauUGCGCGUGcccGCCGCg -3'
miRNA:   3'- uaCUGUCU-GUgcAUGCGCAC---CGGCGa -5'
24894 5' -56.7 NC_005284.1 + 9360 0.72 0.302606
Target:  5'- -cGACGGGCGCGaGCGCGaGGCUuGCg -3'
miRNA:   3'- uaCUGUCUGUGCaUGCGCaCCGG-CGa -5'
24894 5' -56.7 NC_005284.1 + 6575 1.06 0.001055
Target:  5'- cAUGACAGACACGUACGCGUGGCCGCUg -3'
miRNA:   3'- -UACUGUCUGUGCAUGCGCACCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.