Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 9360 | 0.72 | 0.302606 |
Target: 5'- -cGACGGGCGCGaGCGCGaGGCUuGCg -3' miRNA: 3'- uaCUGUCUGUGCaUGCGCaCCGG-CGa -5' |
|||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 27114 | 0.68 | 0.460712 |
Target: 5'- -cGACGGAuCAauUGCGCGUGcccGCCGCg -3' miRNA: 3'- uaCUGUCU-GUgcAUGCGCAC---CGGCGa -5' |
|||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 203 | 0.67 | 0.543637 |
Target: 5'- -aGGCgcgGGGCAUGUgggaGCGCGuUGuGCCGCUg -3' miRNA: 3'- uaCUG---UCUGUGCA----UGCGC-AC-CGGCGA- -5' |
|||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 21121 | 0.67 | 0.55438 |
Target: 5'- -cGAaAGACGUGUACGCG-GGCCaGCg -3' miRNA: 3'- uaCUgUCUGUGCAUGCGCaCCGG-CGa -5' |
|||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 7691 | 0.66 | 0.608863 |
Target: 5'- -cGACGuACAgCGUGCGCGUGaGCgGUg -3' miRNA: 3'- uaCUGUcUGU-GCAUGCGCAC-CGgCGa -5' |
|||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 6575 | 1.06 | 0.001055 |
Target: 5'- cAUGACAGACACGUACGCGUGGCCGCUg -3' miRNA: 3'- -UACUGUCUGUGCAUGCGCACCGGCGA- -5' |
|||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 27659 | 0.67 | 0.543637 |
Target: 5'- --cGCAGAUGCGU-CGCGgcgGGCaCGCg -3' miRNA: 3'- uacUGUCUGUGCAuGCGCa--CCG-GCGa -5' |
|||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 4666 | 0.67 | 0.55438 |
Target: 5'- cAUGGCGaacGcCGCGUGCGCGaucGCCGCg -3' miRNA: 3'- -UACUGU---CuGUGCAUGCGCac-CGGCGa -5' |
|||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 52108 | 0.66 | 0.619854 |
Target: 5'- uUGugAGGCGCuucacagucGUACGCuGUGGCaGCa -3' miRNA: 3'- uACugUCUGUG---------CAUGCG-CACCGgCGa -5' |
|||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 44753 | 0.66 | 0.624255 |
Target: 5'- cGUGGCAaGCGCGacaucacgcucggcuUGCGCaaGGCCGCg -3' miRNA: 3'- -UACUGUcUGUGC---------------AUGCGcaCCGGCGa -5' |
|||||||
24894 | 5' | -56.7 | NC_005284.1 | + | 3523 | 0.67 | 0.532964 |
Target: 5'- -cGAa--GCACGUucuucGCGCGUGGCuCGCUc -3' miRNA: 3'- uaCUgucUGUGCA-----UGCGCACCG-GCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home