miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24895 3' -58.8 NC_005284.1 + 12277 0.65 0.53571
Target:  5'- gGUcCGCGCCGcagugguGUCGcAGCCGgGCGUg -3'
miRNA:   3'- aCGaGCGUGGU-------CAGC-UCGGUgCGCAg -5'
24895 3' -58.8 NC_005284.1 + 30745 0.66 0.53048
Target:  5'- cGCcUGCcagauugauccagcgGCCGGguaggCGAGCCAUGCGaUCg -3'
miRNA:   3'- aCGaGCG---------------UGGUCa----GCUCGGUGCGC-AG- -5'
24895 3' -58.8 NC_005284.1 + 446 0.66 0.52631
Target:  5'- gGCUCGaC-CCGG-CGAGCCggcaGCGCcugGUCg -3'
miRNA:   3'- aCGAGC-GuGGUCaGCUCGG----UGCG---CAG- -5'
24895 3' -58.8 NC_005284.1 + 46522 0.66 0.52631
Target:  5'- cUGCUCGCA-CAGcUCG-GCCAa-CGUCu -3'
miRNA:   3'- -ACGAGCGUgGUC-AGCuCGGUgcGCAG- -5'
24895 3' -58.8 NC_005284.1 + 35491 0.66 0.52631
Target:  5'- uUGCUCGCaACCcuUCGAGCgaaACGaagcCGUCg -3'
miRNA:   3'- -ACGAGCG-UGGucAGCUCGg--UGC----GCAG- -5'
24895 3' -58.8 NC_005284.1 + 31852 0.66 0.52631
Target:  5'- aGCUUGUACUggcaggaauGUCGAGCCucgucugcuGCGCGg- -3'
miRNA:   3'- aCGAGCGUGGu--------CAGCUCGG---------UGCGCag -5'
24895 3' -58.8 NC_005284.1 + 47400 0.66 0.514907
Target:  5'- uUGCccgUCGCACuCAGaUCGAcgaacGCCAgaucggcCGCGUCg -3'
miRNA:   3'- -ACG---AGCGUG-GUC-AGCU-----CGGU-------GCGCAG- -5'
24895 3' -58.8 NC_005284.1 + 21247 0.66 0.511814
Target:  5'- aGCUCGCGgCggcggugAGcuucgccuacaacaUCGGGCCGCGCGcCu -3'
miRNA:   3'- aCGAGCGUgG-------UC--------------AGCUCGGUGCGCaG- -5'
24895 3' -58.8 NC_005284.1 + 15106 0.66 0.495454
Target:  5'- cGCggCGCGCUuGUCGAGCaccuguuGCGCGa- -3'
miRNA:   3'- aCGa-GCGUGGuCAGCUCGg------UGCGCag -5'
24895 3' -58.8 NC_005284.1 + 39281 0.66 0.48535
Target:  5'- -cCUCGCGCUcgaAGUCGGGUaACGCGa- -3'
miRNA:   3'- acGAGCGUGG---UCAGCUCGgUGCGCag -5'
24895 3' -58.8 NC_005284.1 + 8453 0.67 0.465444
Target:  5'- aGCUCG-ACguGUUGcAGUCGgGCGUCg -3'
miRNA:   3'- aCGAGCgUGguCAGC-UCGGUgCGCAG- -5'
24895 3' -58.8 NC_005284.1 + 32776 0.67 0.455652
Target:  5'- cGCUCGCgcgccucuGCCGGUgCGucGGCCuGCGCGg- -3'
miRNA:   3'- aCGAGCG--------UGGUCA-GC--UCGG-UGCGCag -5'
24895 3' -58.8 NC_005284.1 + 43195 0.67 0.455652
Target:  5'- cGCUCGgcCGCgUAGUcgcCGAGCUcCGCGUCg -3'
miRNA:   3'- aCGAGC--GUG-GUCA---GCUCGGuGCGCAG- -5'
24895 3' -58.8 NC_005284.1 + 113 0.67 0.455652
Target:  5'- cGCUCGCGCgCcGUCuucGCCGCGUGa- -3'
miRNA:   3'- aCGAGCGUG-GuCAGcu-CGGUGCGCag -5'
24895 3' -58.8 NC_005284.1 + 43858 0.67 0.445971
Target:  5'- uUGUugagCGCGCC-GUUGAugauCCGCGCGUCg -3'
miRNA:   3'- -ACGa---GCGUGGuCAGCUc---GGUGCGCAG- -5'
24895 3' -58.8 NC_005284.1 + 40017 0.67 0.445971
Target:  5'- uUGCUgGcCACCgaAGUCGAGCgGCGaCGa- -3'
miRNA:   3'- -ACGAgC-GUGG--UCAGCUCGgUGC-GCag -5'
24895 3' -58.8 NC_005284.1 + 6829 0.68 0.417639
Target:  5'- gGCgauUCGCACCgAGUUG-GCgCGCGCGaUCg -3'
miRNA:   3'- aCG---AGCGUGG-UCAGCuCG-GUGCGC-AG- -5'
24895 3' -58.8 NC_005284.1 + 17745 0.68 0.408441
Target:  5'- cGCaggCGCACCGGcUCGGGCgCugGCu-- -3'
miRNA:   3'- aCGa--GCGUGGUC-AGCUCG-GugCGcag -5'
24895 3' -58.8 NC_005284.1 + 5259 0.68 0.407528
Target:  5'- cGCUCGCGCUugcuGUCGAaccugauGCCGuCGUGcUCg -3'
miRNA:   3'- aCGAGCGUGGu---CAGCU-------CGGU-GCGC-AG- -5'
24895 3' -58.8 NC_005284.1 + 31241 0.68 0.381622
Target:  5'- cGCuUCGUcagcaacaACCAGUCGAGgUuugGCGUGUCg -3'
miRNA:   3'- aCG-AGCG--------UGGUCAGCUCgG---UGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.