miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24895 3' -58.8 NC_005284.1 + 25045 0.69 0.364407
Target:  5'- cGCUCGCGCCGGugcuguUCGGcGCCcCGaCGUg -3'
miRNA:   3'- aCGAGCGUGGUC------AGCU-CGGuGC-GCAg -5'
24895 3' -58.8 NC_005284.1 + 19324 0.69 0.364407
Target:  5'- cUGCUCGCACCGcgCGAGauCCAgCGCGa- -3'
miRNA:   3'- -ACGAGCGUGGUcaGCUC--GGU-GCGCag -5'
24895 3' -58.8 NC_005284.1 + 46064 0.69 0.356002
Target:  5'- cGCggaucgaacugCGCGCCGcGUCGAGCgCGCGCa-- -3'
miRNA:   3'- aCGa----------GCGUGGU-CAGCUCG-GUGCGcag -5'
24895 3' -58.8 NC_005284.1 + 53161 0.69 0.331617
Target:  5'- aGCUugCGCGCCAuGUCGAGCgcgagCACGCa-- -3'
miRNA:   3'- aCGA--GCGUGGU-CAGCUCG-----GUGCGcag -5'
24895 3' -58.8 NC_005284.1 + 43728 0.7 0.316055
Target:  5'- cUGCUgauuCAUCAGcgCGAGCuCGCGCGUCa -3'
miRNA:   3'- -ACGAgc--GUGGUCa-GCUCG-GUGCGCAG- -5'
24895 3' -58.8 NC_005284.1 + 21766 0.7 0.308483
Target:  5'- cGCUgGCACUgAG-CG-GCUGCGCGUCg -3'
miRNA:   3'- aCGAgCGUGG-UCaGCuCGGUGCGCAG- -5'
24895 3' -58.8 NC_005284.1 + 54349 0.7 0.30105
Target:  5'- gGCUCGC-CgGGUCGAGCCccagcauUGCGcCg -3'
miRNA:   3'- aCGAGCGuGgUCAGCUCGGu------GCGCaG- -5'
24895 3' -58.8 NC_005284.1 + 8131 0.7 0.293756
Target:  5'- cGCUUGCcguucGCC-GUCuuGCCGCGUGUCg -3'
miRNA:   3'- aCGAGCG-----UGGuCAGcuCGGUGCGCAG- -5'
24895 3' -58.8 NC_005284.1 + 13183 0.71 0.272704
Target:  5'- aGCUCGCACuCGG-CGcGGCCucgcGCGCGUa -3'
miRNA:   3'- aCGAGCGUG-GUCaGC-UCGG----UGCGCAg -5'
24895 3' -58.8 NC_005284.1 + 42929 0.71 0.26596
Target:  5'- cGCcgaCGCGCCAGUCG-GCCugcaACGCGa- -3'
miRNA:   3'- aCGa--GCGUGGUCAGCuCGG----UGCGCag -5'
24895 3' -58.8 NC_005284.1 + 22917 0.71 0.257397
Target:  5'- aUGCggCGCAgCCAGUCGGGCUguucugaucgauugGCGCG-Cg -3'
miRNA:   3'- -ACGa-GCGU-GGUCAGCUCGG--------------UGCGCaG- -5'
24895 3' -58.8 NC_005284.1 + 11168 0.72 0.211232
Target:  5'- aGCUCGCGCCg--CGGccGCCGCGCG-Cg -3'
miRNA:   3'- aCGAGCGUGGucaGCU--CGGUGCGCaG- -5'
24895 3' -58.8 NC_005284.1 + 47793 0.73 0.180364
Target:  5'- gGCgaGCGCCAuGUCGAGCgcgccauguaCGCGCGUCa -3'
miRNA:   3'- aCGagCGUGGU-CAGCUCG----------GUGCGCAG- -5'
24895 3' -58.8 NC_005284.1 + 48202 0.74 0.157763
Target:  5'- aGCUCGCG-CAG-CG-GCCACGCGUa -3'
miRNA:   3'- aCGAGCGUgGUCaGCuCGGUGCGCAg -5'
24895 3' -58.8 NC_005284.1 + 31415 0.74 0.157763
Target:  5'- gGCUUGCGCCAGUucgCGGGCgACGUG-Cg -3'
miRNA:   3'- aCGAGCGUGGUCA---GCUCGgUGCGCaG- -5'
24895 3' -58.8 NC_005284.1 + 33615 0.74 0.157763
Target:  5'- gUGCUCGaugaGCCGuugcUCGAGCCGCGCG-Cg -3'
miRNA:   3'- -ACGAGCg---UGGUc---AGCUCGGUGCGCaG- -5'
24895 3' -58.8 NC_005284.1 + 16926 0.79 0.072583
Target:  5'- cGCUCGCAUCGGaUCGAgcuGCCGCGCG-Ca -3'
miRNA:   3'- aCGAGCGUGGUC-AGCU---CGGUGCGCaG- -5'
24895 3' -58.8 NC_005284.1 + 5956 1.1 0.000367
Target:  5'- gUGCUCGCACCAGUCGAGCCACGCGUCg -3'
miRNA:   3'- -ACGAGCGUGGUCAGCUCGGUGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.